Basic Information
Locus ID:
Lb6G32269
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 280251566 | 280257565 | - | Lb6G32269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 72,405.83 Da | 49.19 | 71.96 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 386 | 534 | 1.07467E-31 | IPR000608 |
| CDD | cd00195 | UBCc | 386 | 534 | 1.07467E-31 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 389 | 535 | 1.5E-23 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 389 | 535 | 1.5E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 372 | 551 | 1.48E-40 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 372 | 551 | 1.48E-40 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 345 | 627 | 4.1E-85 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 345 | 627 | 4.1E-85 | IPR016135 |
| SMART | SM00212 | ubc_7 | 387 | 544 | 1.1E-18 | - |
| SMART | SM00212 | ubc_7 | 387 | 544 | 1.1E-18 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 384 | 544 | 35.240211 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 384 | 544 | 35.240211 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 180 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53025.1 | Ubiquitin-conjugating enzyme family protein. | 0 |
| RefSeq | XP_011004633.1 | PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X1 [Populus euphratica] | 0 |
| Q8GY87 | Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8Z0B7 | E2 ubiquitin-conjugating enzyme OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology