Basic Information
Locus ID:
Lb6G32031
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 270590525 | 270595602 | - | Lb6G32031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 51,430.78 Da | 24.62 | 99.89 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 336 | 432 | 1.22201E-25 | - |
| CDD | cd00030 | C2 | 158 | 260 | 8.06604E-25 | - |
| CDD | cd00030 | C2 | 158 | 260 | 8.06604E-25 | - |
| CDD | cd00030 | C2 | 336 | 432 | 1.22201E-25 | - |
| Pfam | PF00168 | C2 domain | 156 | 260 | 2.4E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 3 | 142 | 7.7E-8 | IPR039010 |
| Pfam | PF00168 | C2 domain | 334 | 435 | 1.0E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 334 | 435 | 1.0E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 3 | 142 | 7.7E-8 | IPR039010 |
| Pfam | PF00168 | C2 domain | 156 | 260 | 2.4E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 154 | 286 | 6.55E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 332 | 452 | 1.27E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 332 | 452 | 1.27E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 154 | 286 | 6.55E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 323 | 452 | 3.6E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 152 | 294 | 1.2E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 152 | 294 | 1.2E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 323 | 452 | 3.6E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 157 | 257 | 6.5E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 335 | 433 | 4.8E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 157 | 257 | 6.5E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 335 | 433 | 4.8E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 315 | 434 | 20.023191 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 143 | 22.202917 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 137 | 258 | 20.733362 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 143 | 22.202917 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 315 | 434 | 20.023191 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 137 | 258 | 20.733362 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 399 | 407 | 1.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 351 | 363 | 1.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 377 | 390 | 1.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 377 | 390 | 1.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 351 | 363 | 1.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 399 | 407 | 1.4E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_028062948.1 | synaptotagmin-5-like [Camellia sinensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834YU37 | Synaptotagmin-5-like OS=Tetracentron sinense OX=13715 GN=HHK36_021387 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology