Basic Information
Locus ID:
Lb6G31964
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SERK5
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 268633007 | 268633610 | - | Lb6G31964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 16,901.74 Da | 36.05 | 68.68 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 7 | 51 | 6.3E-6 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 7 | 51 | 6.3E-6 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 110 | 4.45E-14 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 110 | 4.45E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 122 | 1.1E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 122 | 1.1E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 152 | 8.513628 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 152 | 8.513628 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_027106326.1 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 isoform X2 [Coffea arabica] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B6ZPT6 | Putative BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like OS=Davidia involucrata OX=16924 GN=Din_014947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30110870 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G006660 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020346 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31964 |
| Poaceae | Echinochloa crus-galli | 1 | BH05.1369 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17468, nbisL1-mrna-8036 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5751 |
| Salicaceae | Populus euphratica | 1 | populus_peu16677 |