Basic Information
Locus ID:
Lb6G31874
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
VWA / Hh protein intein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 264788551 | 264801672 | + | Lb6G31874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 156,855.09 Da | 47.81 | 83.24 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 80 | 124 | 2.27579E-10 | - |
| CDD | cd16448 | RING-H2 | 80 | 124 | 2.27579E-10 | - |
| Pfam | PF00069 | Protein kinase domain | 1120 | 1294 | 2.1E-25 | IPR000719 |
| Pfam | PF00092 | von Willebrand factor type A domain | 265 | 433 | 1.0E-19 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 79 | 109 | 1.3E-9 | IPR001841 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1053 | 1114 | 2.1E-5 | IPR001245 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 605 | 678 | 4.4E-20 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 265 | 433 | 1.0E-19 | IPR002035 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1053 | 1114 | 2.1E-5 | IPR001245 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 605 | 678 | 4.4E-20 | IPR032838 |
| Pfam | PF17123 | RING-like zinc finger | 79 | 109 | 1.3E-9 | IPR001841 |
| Pfam | PF00069 | Protein kinase domain | 1120 | 1294 | 2.1E-25 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 130 | 4.8E-14 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 265 | 436 | 1.44E-28 | IPR036465 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1025 | 1296 | 6.7E-62 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 130 | 4.8E-14 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 265 | 436 | 1.44E-28 | IPR036465 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1025 | 1296 | 6.7E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 171 | 7.8E-12 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1036 | 1108 | 2.9E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1109 | 1299 | 3.8E-48 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 261 | 437 | 4.7E-40 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 261 | 437 | 4.7E-40 | IPR036465 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1109 | 1299 | 3.8E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1036 | 1108 | 2.9E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 171 | 7.8E-12 | IPR013083 |
| SMART | SM00220 | serkin_6 | 1049 | 1297 | 3.9E-18 | IPR000719 |
| SMART | SM00184 | ring_2 | 80 | 123 | 6.5E-7 | IPR001841 |
| SMART | SM00220 | serkin_6 | 1049 | 1297 | 3.9E-18 | IPR000719 |
| SMART | SM00327 | VWA_4 | 264 | 432 | 5.7E-13 | IPR002035 |
| SMART | SM00327 | VWA_4 | 264 | 432 | 5.7E-13 | IPR002035 |
| SMART | SM00184 | ring_2 | 80 | 123 | 6.5E-7 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 257 | 436 | 12.718335 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 257 | 436 | 12.718335 | IPR002035 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1049 | 1303 | 26.209396 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1049 | 1303 | 26.209396 | IPR000719 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 124 | 11.972923 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 124 | 11.972923 | IPR001841 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1055 | 1077 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1141 | 1153 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1055 | 1077 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1141 | 1153 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 71 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_002285265.1 | PREDICTED: uncharacterized protein LOC100233041 [Vitis vinifera] | 0 |
| Q8VYY5 | Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana OX=3702 GN=NCRK PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3HAQ8 | Zinc finger, RING-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_20536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology