Basic Information
Locus ID:
Lb6G31857
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 263936969 | 263941035 | - | Lb6G31857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 58,547.34 Da | 66.31 | 85.92 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 266 | 314 | 6.34421E-16 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 266 | 314 | 6.34421E-16 | - |
| Pfam | PF12906 | RING-variant domain | 266 | 313 | 7.5E-10 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 266 | 313 | 7.5E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 262 | 317 | 8.83E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 262 | 317 | 8.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 321 | 4.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 321 | 4.7E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 265 | 314 | 8.6E-18 | IPR011016 |
| SMART | SM00744 | ringv_2 | 265 | 314 | 8.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 258 | 320 | 19.10745 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 258 | 320 | 19.10745 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 250 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050212463.1 | uncharacterized protein LOC126664224 [Mercurialis annua] | 0 |
| TrEMBL | A0A438IKK8 | RING-CH-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_025961 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology