Basic Information
Locus ID:
Lb6G31402
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 236336706 | 236342306 | - | Lb6G31402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 71,737.56 Da | 47.02 | 66.42 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 387 | 516 | 3.08076E-63 | - |
| CDD | cd18787 | SF2_C_DEAD | 387 | 516 | 3.08076E-63 | - |
| CDD | cd00201 | WW | 24 | 55 | 3.76712E-5 | IPR001202 |
| CDD | cd00201 | WW | 24 | 55 | 3.76712E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 192 | 362 | 6.9E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 399 | 507 | 3.3E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 23 | 53 | 2.2E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 192 | 362 | 6.9E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 399 | 507 | 3.3E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 23 | 53 | 2.2E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 55 | 2.4E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 240 | 522 | 5.74E-76 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 240 | 522 | 5.74E-76 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 55 | 2.4E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 375 | 6.0E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 376 | 549 | 3.7E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 375 | 6.0E-87 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 60 | 3.3E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 376 | 549 | 3.7E-59 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 60 | 3.3E-5 | - |
| SMART | SM00487 | ultradead3 | 187 | 390 | 3.7E-67 | IPR014001 |
| SMART | SM00456 | ww_5 | 22 | 55 | 2.3E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 427 | 507 | 1.7E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 187 | 390 | 3.7E-67 | IPR014001 |
| SMART | SM00456 | ww_5 | 22 | 55 | 2.3E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 427 | 507 | 1.7E-33 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 199 | 373 | 32.276062 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 168 | 196 | 9.849379 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 21 | 55 | 11.3096 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 168 | 196 | 9.849379 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 199 | 373 | 32.276062 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 21 | 55 | 11.3096 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 402 | 546 | 25.267872 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 402 | 546 | 25.267872 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 319 | 327 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 319 | 327 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 27 | 53 | - | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 27 | 53 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_034207206.1 | DEAD-box ATP-dependent RNA helicase 46 isoform X1 [Prunus dulcis] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5E4ET23 | DEAD-box ATP-dependent RNA helicase 46 OS=Prunus dulcis OX=3755 GN=ALMOND_2B005733 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology