Basic Information
Locus ID:
Lb6G31392
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 235611905 | 235614363 | + | Lb6G31392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 43,613.72 Da | 52.41 | 84.89 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 110 | 1.8E-13 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 350 | 393 | 1.0E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 110 | 1.8E-13 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 350 | 393 | 1.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 398 | 1.99E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 398 | 1.99E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 318 | 398 | 7.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 318 | 398 | 7.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 351 | 392 | 4.6E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 351 | 392 | 4.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 351 | 393 | 12.371254 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 351 | 393 | 12.371254 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667464.1 | putative RING-H2 finger protein ATL21A [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2R6R9I9 | RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09217 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology