halophFGD

Basic Information

Locus ID: Lb6G31384

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Rho GTPase-activating protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	234504354	234513825	-	Lb6G31384

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.01	102,935.62 Da	57.70	62.95	-0.95

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00159	RhoGAP	194	333	1.30119E-29	-
CDD	cd00821	PH	34	133	3.74457E-12	-
CDD	cd00159	RhoGAP	194	333	1.30119E-29	-
CDD	cd00821	PH	34	133	3.74457E-12	-
Pfam	PF00620	RhoGAP domain	194	338	6.8E-28	IPR000198
Pfam	PF00169	PH domain	33	137	5.7E-11	IPR001849
Pfam	PF14389	Leucine-zipper of ternary complex factor MIP1	631	706	1.9E-10	IPR025757
Pfam	PF00620	RhoGAP domain	194	338	6.8E-28	IPR000198
Pfam	PF00169	PH domain	33	137	5.7E-11	IPR001849
Pfam	PF14389	Leucine-zipper of ternary complex factor MIP1	631	706	1.9E-10	IPR025757
SUPERFAMILY	SSF48350	GTPase activation domain, GAP	194	391	7.06E-32	IPR008936
SUPERFAMILY	SSF48350	GTPase activation domain, GAP	194	391	7.06E-32	IPR008936
SUPERFAMILY	SSF50729	PH domain-like	22	144	8.22E-17	-
SUPERFAMILY	SSF50729	PH domain-like	22	144	8.22E-17	-
Gene3D	G3DSA:2.30.29.30	-	20	139	4.4E-17	IPR011993
Gene3D	G3DSA:1.10.555.10	Rho GTPase activation protein	162	391	4.1E-40	IPR008936
Gene3D	G3DSA:2.30.29.30	-	20	139	4.4E-17	IPR011993
Gene3D	G3DSA:1.10.555.10	Rho GTPase activation protein	162	391	4.1E-40	IPR008936
SMART	SM00233	PH_update	32	140	7.0E-15	IPR001849
SMART	SM00233	PH_update	32	140	7.0E-15	IPR001849
SMART	SM00324	RhoGAP_3	191	386	3.1E-21	IPR000198
SMART	SM00324	RhoGAP_3	191	386	3.1E-21	IPR000198
ProSiteProfiles	PS50238	Rho GTPase-activating proteins domain profile.	185	389	29.483124	IPR000198
ProSiteProfiles	PS50003	PH domain profile.	31	138	15.9801	IPR001849
ProSiteProfiles	PS50238	Rho GTPase-activating proteins domain profile.	185	389	29.483124	IPR000198
ProSiteProfiles	PS50003	PH domain profile.	31	138	15.9801	IPR001849
MobiDBLite	mobidb-lite	consensus disorder prediction	865	888	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	753	776	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	477	511	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	412	466	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	174	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	794	857	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	713	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	892	915	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	713	752	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	928	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	412	466	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	892	915	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	713	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	928	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	713	752	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	753	776	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	794	857	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	477	511	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	573	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	513	541	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	513	541	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	865	888	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	141	174	-	-
Coils	Coil	Coil	618	659	-	-
Coils	Coil	Coil	586	613	-	-
Coils	Coil	Coil	618	659	-	-
Coils	Coil	Coil	816	850	-	-
Coils	Coil	Coil	668	709	-	-
Coils	Coil	Coil	816	850	-	-
Coils	Coil	Coil	668	709	-	-
Coils	Coil	Coil	586	613	-	-

Gene Ontology

Biological Process:

GO:0007165 (signal transduction)

KEGG Pathway

KO Term:

K20642 (Rho GTPase-activating protein 22/24/25)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.
RefSeq	XP_010675320.1	rho GTPase-activating protein REN1 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	F4JQZ3	Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2
TrEMBL	A0A8J4VY48	Rho GTPase-activating protein REN1-like OS=Castanea mollissima OX=60419 GN=CMV_001320 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg10792, jg16216, jg16353, jg35607, jg6142, jg8522
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11774, gene_23365
Amaranthaceae	Atriplex hortensis	3	Ah005078, Ah012278, Ah023719
Amaranthaceae	Beta vulgaris	2	BVRB_1g007850, BVRB_4g073750
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17790, Sbi_jg4168, Sbi_jg49634, Sbi_jg62450
Amaranthaceae	Salicornia europaea	2	Seu_jg1024, Seu_jg5615
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001020, GOSA_00007213
Amaranthaceae	Suaeda glauca	2	Sgl10570, Sgl61679
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000010800, gene:ENSEOMG00000013959 ... gene:ENSEOMG00000026994, gene:ENSEOMG00000040372
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0010740, CQ.Regalona.r1.1BG0015060 ... CQ.Regalona.r1.4AG0002250, CQ.Regalona.r1.4BG0002330
Anacardiaceae	Pistacia vera	2	pistato.v30041760, pistato.v30050660
Apiaceae	Apium graveolens	3	Ag1G01020, Ag2G00498, Ag9G01469
Arecaceae	Cocos nucifera	2	COCNU_02G017870, COCNU_16G001940
Arecaceae	Phoenix dactylifera	4	gene-LOC103695721, gene-LOC103701658, gene-LOC103716927 ... gene-LOC120111581
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1554.V1.1, AsparagusV1_05.61.V1.1 ... AsparagusV1_07.1656.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G10531, Ftri16G19225, Ftri17G12387, Ftri18G02868 ... Ftri2G10438, Ftri6G00381
Brassicaceae	Arabidopsis thaliana	3	AT4G24580.1, AT5G12150.1, AT5G19390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012649m.g.v1.0, Thhalv10012698m.g.v1.0 ... Thhalv10024336m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g25020.v2.2, Sp6g31480.v2.2, Sp7g22580.v2.2
Brassicaceae	Brassica nigra	6	BniB02g043320.2N, BniB02g049950.2N, BniB02g081270.2N ... BniB03g013070.2N, BniB05g012620.2N, BniB05g044290.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1219, Ceq05G1615
Casuarinaceae	Casuarina glauca	2	Cgl03G1323, Cgl05G1611
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g05610, gene.Cymno09g01250, gene.Cymno11g10110
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g07490, gene.Thate06g22020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12393, nbisL1-mrna-8782
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.1580, evm.TU.LG09.125
Plantaginaceae	Plantago ovata	3	Pov_00017200, Pov_00027423, Pov_00037198
Plumbaginaceae	Limonium bicolor	4	Lb3G15599, Lb3G15600, Lb3G15601, Lb6G31384
Poaceae	Echinochloa crus-galli	12	AH01.3596, AH01.4299, AH03.3949, AH06.31, BH01.3943, BH06.28 ... BH01.4604, BH03.4248, CH01.4207, CH01.4915, CH06.25, CH07.250
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0248760, gene-QOZ80_3BG0279500 ... gene-QOZ80_3BG0286460, gene-QOZ80_6AG0505710, gene-QOZ80_6BG0457750, gene-QOZ80_7AG0580160, gene-QOZ80_7BG0611260
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0117090.1, HORVU.MOREX.r3.4HG0372920.1 ... HORVU.MOREX.r3.4HG0390910.1
Poaceae	Lolium multiflorum	5	gene-QYE76_008107, gene-QYE76_039096, gene-QYE76_067737 ... gene-QYE76_067785, gene-QYE76_069178
Poaceae	Oryza coarctata	6	Oco05G008570, Oco05G013820, Oco06G008890, Oco06G012530 ... Oco13G014760, Oco14G015580
Poaceae	Oryza sativa	4	LOC_Os03g11140.1, LOC_Os03g15180.1, LOC_Os03g24180.1 ... LOC_Os07g46450.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G350500, gene-BS78_01G412700 ... gene-BS78_02G370000, gene-BS78_10G002900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102111, Pt_Chr0102140, Pt_Chr0102745, Pt_Chr0305060
Poaceae	Sporobolus alterniflorus	9	Chr01G034960, Chr04G011620, Chr07G011030, Chr10G001070 ... Chr12G004650, Chr14G000100, Chr14G000440, Chr19G000910, Chr27G016520
Poaceae	Thinopyrum elongatum	3	Tel2E01G271600, Tel4E01G289600, Tel4E01G383000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG016170, gene_TRIDC2BG019470 ... gene_TRIDC4AG011490, gene_TRIDC4AG025330, gene_TRIDC4BG027380, gene_TRIDC4BG038860
Poaceae	Triticum aestivum	9	TraesCS2A02G131400.3, TraesCS2B02G153800.3 ... TraesCS2D02G133500.2, TraesCS4A02G084500.1, TraesCS4A02G163400.1, TraesCS4B02G153200.1, TraesCS4B02G219700.1, TraesCS4D02G163800.1, TraesCS4D02G220100.1
Poaceae	Zea mays	8	Zm00001eb011160_P001, Zm00001eb017310_P001 ... Zm00001eb110720_P002, Zm00001eb222720_P001, Zm00001eb268580_P001, Zm00001eb329690_P003, Zm00001eb379420_P001, Zm00001eb398340_P001
Poaceae	Zoysia japonica	4	nbis-gene-1544, nbis-gene-3267, nbis-gene-51235 ... nbis-gene-53447
Poaceae	Zoysia macrostachya	5	Zma_g1181, Zma_g28959, Zma_g31212, Zma_g3617, Zma_g5711
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.1884, evm.TU.LG06.470, evm.TU.LG08.1425 ... evm.TU.LG18.1688, evm.TU.LG20.196, evm.TU.LG22.321
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13630, gene.Posoc08g04230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.80, evm.TU.Scaffold_13_RagTag.984 ... evm.TU.Scaffold_7_RagTag.933, evm.TU.Scaffold_8_RagTag.809, evm.TU.Scaffold_8_RagTag.810
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19397, nbisL1-mrna-24720, nbisL1-mrna-9429
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15707, nbisL1-mrna-18063, nbisL1-mrna-20611 ... nbisL1-mrna-4915
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16345, nbisL1-mrna-19388, nbisL1-mrna-20535 ... nbisL1-mrna-6761
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.711, evm.TU.utg000002l.712 ... evm.TU.utg000015l.585, evm.TU.utg000018l.479, evm.TU.utg000027l.524
Rhizophoraceae	Kandelia obovata	3	Maker00003117, Maker00015901, Maker00018181
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11507, nbisL1-mrna-13051, nbisL1-mrna-4491 ... nbisL1-mrna-5473
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10178, nbisL1-mrna-11618, nbisL1-mrna-17031 ... nbisL1-mrna-20810
Salicaceae	Populus euphratica	5	populus_peu01790, populus_peu11981, populus_peu14556 ... populus_peu32194, populus_peu36029
Solanaceae	Lycium barbarum	4	gene-LOC132619321, gene-LOC132626383, gene-LOC132627612 ... gene-LOC132643649
Solanaceae	Solanum chilense	3	SOLCI001222600, SOLCI002313900, SOLCI003459600
Solanaceae	Solanum pennellii	3	gene-LOC107004985, gene-LOC107006844, gene-LOC107018168
Tamaricaceae	Reaumuria soongarica	3	gene_15073, gene_5833, gene_9604
Tamaricaceae	Tamarix chinensis	3	TC02G2930, TC03G3003, TC09G2514
Zosteraceae	Zostera marina	3	Zosma01g10370.v3.1, Zosma03g17740.v3.1, Zosma06g13270.v3.1