Basic Information
Locus ID:
Lb6G31247
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Nucleotidyltransferase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 222688422 | 222707765 | + | Lb6G31247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 170,551.20 Da | 45.74 | 79.04 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01909 | Nucleotidyltransferase domain | 1184 | 1227 | 4.8E-6 | IPR002934 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 1184 | 1227 | 4.8E-6 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 1367 | 1498 | 1.22E-26 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 1157 | 1363 | 2.87E-17 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 1367 | 1498 | 1.22E-26 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 1157 | 1363 | 2.87E-17 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 1326 | 1521 | 3.1E-44 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 1174 | 1286 | 5.8E-12 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 1326 | 1521 | 3.1E-44 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 1174 | 1286 | 5.8E-12 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 688 | - | - |
| Coils | Coil | Coil | 400 | 420 | - | - |
| Coils | Coil | Coil | 400 | 420 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00060.1 | Nucleotidyltransferase family protein. | 0 |
| RefSeq | XP_017984642.1 | PREDICTED: uncharacterized protein LOC18614370 isoform X1 [Theobroma cacao] | 0 |
| Q7KVS9 | Non-canonical poly(A) RNA polymerase protein Trf4-1 OS=Drosophila melanogaster OX=7227 GN=Trf4-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3B2N9 | NTP_transf_2 domain-containing protein/PAP_assoc domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05566 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1323 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29245, Sbi_jg3484 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000236 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11337, Sgl16726 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013338, gene:ENSEOMG00000050030 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0006570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002450 |
| Apiaceae | Apium graveolens | 1 | Ag10G00285 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G007610, COCNU_09G003120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710741, gene-LOC103712263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.203.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12240 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g041960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1124 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1144 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.140 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014955 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31247 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2621, BH06.2424, CH06.2710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0736950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036219 |
| Poaceae | Oryza coarctata | 2 | Oco11G014920, Oco12G015090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G222900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103209, Pt_Chr0401298 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G019970, Chr11G002690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G797400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG058740, gene_TRIDC7AG065730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G471100.1, TraesCS7B02G373100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb274180_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40526, nbis-gene-9794 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30970, Zma_g33230 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2438 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g11570, gene.Posoc07g04340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1537 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8389, nbisL1-mrna-8635 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15150 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003131 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22743 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645746 |
| Solanaceae | Solanum chilense | 1 | SOLCI005933700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005675 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_850 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2616 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03730.v3.1 |