Basic Information
Locus ID:
Lb6G31205
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 220364693 | 220367994 | - | Lb6G31205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 34,185.57 Da | 47.07 | 71.07 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 62 | 100 | 2.14636E-14 | - |
| CDD | cd16571 | RING-HC_SIAHs | 62 | 100 | 2.14636E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 106 | 293 | 5.3E-76 | IPR018121 |
| Pfam | PF03145 | Seven in absentia protein family | 106 | 293 | 5.3E-76 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 104 | 3.53E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 117 | 291 | 2.09E-46 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 117 | 291 | 2.09E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 104 | 3.53E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 174 | 297 | 1.6E-34 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 172 | 2.8E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 174 | 297 | 1.6E-34 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 116 | 5.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 172 | 2.8E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 116 | 5.1E-7 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 100 | 9.494419 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 100 | 9.494419 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 117 | 177 | 14.228174 | IPR013010 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 117 | 177 | 14.228174 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010671441.1 | E3 ubiquitin-protein ligase SINAT5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P6SNW2 | RING-type E3 ubiquitin transferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0380621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology