Basic Information
Locus ID:
Lb6G31023
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 206759864 | 206765281 | + | Lb6G31023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 51,342.62 Da | 51.25 | 60.34 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 423 | 466 | 5.95303E-25 | - |
| CDD | cd16729 | RING-HC_RGLG_plant | 423 | 466 | 5.95303E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 420 | 461 | 1.6E-7 | - |
| Pfam | PF07002 | Copine | 142 | 356 | 1.6E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 420 | 461 | 1.6E-7 | - |
| Pfam | PF07002 | Copine | 142 | 356 | 1.6E-74 | IPR010734 |
| SUPERFAMILY | SSF57850 | RING/U-box | 415 | 461 | 2.56E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 415 | 461 | 2.56E-5 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 118 | 301 | 6.67E-11 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 118 | 301 | 6.67E-11 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 407 | 466 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 407 | 466 | 1.2E-10 | IPR013083 |
| SMART | SM00327 | VWA_4 | 117 | 320 | 1.2E-7 | IPR002035 |
| SMART | SM00327 | VWA_4 | 117 | 320 | 1.2E-7 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 423 | 456 | 10.77793 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 423 | 456 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 57 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_051119863.1 | E3 ubiquitin-protein ligase RGLG2-like [Andrographis paniculata] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BZV3 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_004575 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology