Basic Information
Locus ID:
Lb6G30919
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 189316878 | 189320799 | - | Lb6G30919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 27,563.95 Da | 39.40 | 95.46 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 1.03657E-50 | - |
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 1.03657E-50 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 1.0E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 6.4E-25 | IPR001351 |
| Pfam | PF07650 | KH domain | 20 | 93 | 1.0E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 6.4E-25 | IPR001351 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 3.88E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 1.14E-27 | IPR036419 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 1.14E-27 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 3.88E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 219 | 8.2E-66 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 1.7E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 219 | 8.2E-66 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 1.7E-47 | IPR015946 |
| SMART | SM00322 | kh_6 | 42 | 111 | 0.0041 | IPR004087 |
| SMART | SM00322 | kh_6 | 42 | 111 | 0.0041 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | 2.1E-70 | IPR005703 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | 2.1E-70 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.49278 | IPR004044 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.49278 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 147 | 183 | - | IPR018280 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 147 | 183 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_023547512.1 | 40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1KD29 | 40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494511 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology