Basic Information
Locus ID:
Lb6G30747
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 145761360 | 145767598 | - | Lb6G30747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 60,251.87 Da | 39.88 | 97.45 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 268 | 485 | 2.0E-43 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 268 | 485 | 2.0E-43 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 133 | 168 | 1.7E-6 | IPR025875 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 133 | 168 | 1.7E-6 | IPR025875 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 188 | 7.37E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 245 | 521 | 7.69E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 188 | 7.37E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 245 | 521 | 7.69E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 344 | 542 | 9.8E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 236 | 343 | 1.4E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 344 | 542 | 9.8E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 203 | 2.0E-54 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 236 | 343 | 1.4E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 203 | 2.0E-54 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 83 | 107 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 180 | 26.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 267 | 509 | 1.9E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 100.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 267 | 509 | 1.9E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 155 | 180 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 83 | 107 | 22.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 267 | 545 | 34.831135 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 267 | 545 | 34.831135 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 273 | 295 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 273 | 295 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 390 | 402 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 390 | 402 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_047340892.1 | somatic embryogenesis receptor kinase 1 isoform X2 [Impatiens glandulifera] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5B9Y5 | Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_027409 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology