Basic Information
Locus ID:
Lb6G30602
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 115867019 | 115870632 | + | Lb6G30602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 29,998.36 Da | 29.52 | 70.82 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 67 | 1.5E-7 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 67 | 1.5E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 83 | 5.43E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 83 | 5.43E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 109 | 3.3E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 109 | 3.3E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 6 | 75 | 1.7E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 6 | 75 | 1.7E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 5 | 79 | 11.997507 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 5 | 79 | 11.997507 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 266 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021846253.1 | binding partner of ACD11 1-like [Spinacia oleracea] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DCM2 | RRM domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology