Basic Information
Locus ID:
Lb6G30601
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 115477102 | 115480043 | + | Lb6G30601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 23,276.78 Da | 35.68 | 69.36 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 67 | 9.6E-8 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 67 | 9.6E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 83 | 3.39E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 83 | 3.39E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 105 | 3.2E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 105 | 3.2E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 6 | 75 | 1.7E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 6 | 75 | 1.7E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 5 | 79 | 11.997507 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 5 | 79 | 11.997507 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 218 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021846253.1 | binding partner of ACD11 1-like [Spinacia oleracea] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DCM2 | RRM domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology