HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Lb6G30568
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: WD repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr06 107772034 107773121 + Lb6G30568
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.11 14,225.07 Da 52.24 95.15 -0.16
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF50978 WD40 repeat-like 3 78 9.49E-10 IPR036322
SUPERFAMILY SSF50978 WD40 repeat-like 3 78 9.49E-10 IPR036322
Gene3D G3DSA:2.130.10.10 - 1 116 3.2E-8 IPR015943
Gene3D G3DSA:2.130.10.10 - 1 116 3.2E-8 IPR015943
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K20241 (WD repeat-containing protein 44)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G42010.2 - 0
RefSeq XP_017241067.1 PREDICTED: transcriptional repressor tup11 [Daucus carota subsp. sativus] 0
TrEMBL A0A166G9D1 WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001355 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 1 Ah021556
Amaranthaceae Suaeda aralocaspica 1 GOSA_00017791
Plumbaginaceae Limonium bicolor 4 Lb0G37719, Lb1G03647, Lb3G15574, Lb6G30568
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.