Basic Information
Locus ID:
Lb6G30549
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 100003792 | 100005560 | + | Lb6G30549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 46,963.80 Da | 33.12 | 86.63 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 337 | 412 | 9.94297E-34 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 337 | 412 | 9.94297E-34 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 11 | 252 | 3.9E-72 | IPR013103 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 11 | 252 | 3.9E-72 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 11 | 402 | 4.89E-32 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 11 | 402 | 4.89E-32 | IPR043502 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_022020159.1 | uncharacterized mitochondrial protein AtMg00810-like [Helianthus annuus] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | M1ANG9 | Integrase catalytic domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30549 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_037225, gene-QYE76_062914 |