Basic Information
Locus ID:
Lb6G30308
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 62896844 | 62899322 | - | Lb6G30308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 20,793.69 Da | 45.90 | 73.82 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 55 | 98 | 3.0E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 55 | 98 | 3.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 104 | 8.33E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 104 | 8.33E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 104 | 1.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 104 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 56 | 97 | 2.5E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 55 | 98 | 0.0018 | IPR011016 |
| SMART | SM00184 | ring_2 | 56 | 97 | 2.5E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 55 | 98 | 0.0018 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 98 | 12.961374 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 98 | 12.961374 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022872676.1 | E3 ubiquitin-protein ligase RHA2B-like [Olea europaea var. sylvestris] | 0 |
| Q5R476 | E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii OX=9601 GN=RNF111 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S0RDH9 | E3 ubiquitin- ligase RHA2B-like OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A072099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||