Basic Information
Locus ID:
Lb6G30260
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 59830733 | 59832014 | + | Lb6G30260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 14,317.90 Da | 39.90 | 73.82 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 3 | 120 | 3.9E-16 | IPR001574 |
| Pfam | PF00161 | Ribosome inactivating protein | 3 | 120 | 3.9E-16 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 3 | 108 | 7.2E-17 | IPR036041 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 3 | 108 | 7.2E-17 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 108 | 9.4E-18 | IPR016138 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 108 | 9.4E-18 | IPR016138 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028792480.1 | ribosome-inactivating protein charybdin-like [Prosopis alba] | 0 |
| P84786 | Ribosome-inactivating protein charybdin OS=Drimia maritima OX=82070 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SCI8 | uncharacterized protein LOC105059301 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059301 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology