Basic Information
Locus ID:
Lb6G30165
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 51780996 | 51790087 | - | Lb6G30165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 20,291.88 Da | 67.76 | 60.55 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 90 | 132 | 1.31E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 182 | 6.1E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 90 | 132 | 1.31E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 182 | 6.1E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 182 | 1.4E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 182 | 1.4E-6 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 181 | 2.8E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 139 | 181 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 73 | 138 | 22.698807 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 182 | 11.338544 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 73 | 138 | 22.698807 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 182 | 11.338544 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 71 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010321192.1 | E3 ubiquitin-protein ligase MIEL1 isoform X1 [Solanum lycopersicum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834LRD1 | E3 ubiquitin-protein ligase MIEL1-like OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim04G0217300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||