Basic Information
Locus ID:
Lb6G30136
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 50228205 | 50240955 | - | Lb6G30136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 18,468.66 Da | 67.24 | 89.69 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 69 | 117 | 3.88664E-18 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 69 | 117 | 3.88664E-18 | - |
| Pfam | PF12906 | RING-variant domain | 69 | 116 | 1.3E-11 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 69 | 116 | 1.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 120 | 4.89E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 120 | 4.89E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 129 | 2.6E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 129 | 2.6E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 68 | 117 | 8.5E-17 | IPR011016 |
| SMART | SM00744 | ringv_2 | 68 | 117 | 8.5E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 61 | 123 | 20.555628 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 61 | 123 | 20.555628 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.4 | - | 0 |
| RefSeq | XP_010694496.1 | E3 ubiquitin-protein ligase MARCHF8 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8BEF4 | RING-CH-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g093560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology