Basic Information
Locus ID:
Lb6G30046
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 43070191 | 43106174 | - | Lb6G30046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 206,991.73 Da | 47.18 | 93.75 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 127 | 199 | 4.81467E-30 | - |
| CDD | cd01647 | RT_LTR | 127 | 199 | 4.81467E-30 | - |
| CDD | cd14002 | STKc_STK36 | 595 | 847 | 1.98147E-174 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 258 | 344 | 7.13316E-39 | - |
| CDD | cd14002 | STKc_STK36 | 595 | 847 | 1.98147E-174 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 258 | 344 | 7.13316E-39 | - |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 258 | 323 | 3.8E-19 | IPR041373 |
| Pfam | PF17921 | Integrase zinc binding domain | 410 | 457 | 1.3E-7 | IPR041588 |
| Pfam | PF00069 | Protein kinase domain | 597 | 847 | 5.3E-77 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 597 | 847 | 5.3E-77 | IPR000719 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 139 | 199 | 2.9E-11 | IPR000477 |
| Pfam | PF17921 | Integrase zinc binding domain | 410 | 457 | 1.3E-7 | IPR041588 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 258 | 323 | 3.8E-19 | IPR041373 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 139 | 199 | 2.9E-11 | IPR000477 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1619 | 1848 | 8.64E-21 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1619 | 1848 | 8.64E-21 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 965 | 1825 | 1.05E-10 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 588 | 854 | 4.05E-91 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 55 | 329 | 9.67E-65 | IPR043502 |
| SUPERFAMILY | SSF48371 | ARM repeat | 965 | 1825 | 1.05E-10 | IPR016024 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 55 | 329 | 9.67E-65 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 588 | 854 | 4.05E-91 | IPR011009 |
| Gene3D | G3DSA:3.30.70.270 | - | 157 | 199 | 3.4E-22 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 60 | 112 | 1.8E-8 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 127 | 156 | 3.4E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 588 | 879 | 1.9E-93 | - |
| Gene3D | G3DSA:1.10.340.70 | - | 380 | 461 | 5.5E-10 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 60 | 112 | 1.8E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 588 | 879 | 1.9E-93 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 127 | 156 | 3.4E-22 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1600 | 1859 | 1.9E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 1600 | 1859 | 1.9E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.70.270 | - | 207 | 241 | 5.4E-5 | IPR043128 |
| Gene3D | G3DSA:1.10.340.70 | - | 380 | 461 | 5.5E-10 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 207 | 241 | 5.4E-5 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 157 | 199 | 3.4E-22 | IPR043128 |
| SMART | SM00220 | serkin_6 | 597 | 847 | 1.4E-103 | IPR000719 |
| SMART | SM00220 | serkin_6 | 597 | 847 | 1.4E-103 | IPR000719 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 1737 | 1768 | 9.3974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 1737 | 1768 | 9.3974 | IPR000225 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 597 | 847 | 53.417347 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 597 | 847 | 53.417347 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 603 | 626 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 714 | 726 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 603 | 626 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 714 | 726 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 902 | - | - |
| Coils | Coil | Coil | 631 | 658 | - | - |
| Coils | Coil | Coil | 631 | 658 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50240.2 | Protein kinase family protein with ARM repeat domain. The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED. | 0 |
| RefSeq | XP_031285915.1 | serine/threonine-protein kinase TIO [Pistacia vera] | 0 |
| Q2QAV0 | Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JQI5 | non-specific serine/threonine protein kinase OS=Jatropha curcas OX=180498 GN=JCGZ_00576 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34288 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_16227, gene_19063, gene_20899 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018627, Ah030779, Ah031451 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g052030, BVRB_7g157410 |
| Amaranthaceae | Salicornia bigelovii | 10 | Sbi_jg15087, Sbi_jg27291, Sbi_jg33244, Sbi_jg41872 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg26397, Seu_jg27596, Seu_jg27597, Seu_jg7954 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020065 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl01343, Sgl06420, Sgl71355, Sgl71356, Sgl74949, Sgl74950 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000165, gene:ENSEOMG00000044046 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0005090, CQ.Regalona.r1.3BG0005110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30098950, pistato.v30101130 |
| Apiaceae | Apium graveolens | 1 | Ag3G02051 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704645 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1280.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33559 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G50240.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011182m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g37070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g031000.2N, BniB07g005040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1059 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1016, Cgl02G1017, Cgl02G1101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16220 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0307s00005.v1.0, Dusal.0307s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10981 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012859, Pov_00028682 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30046 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.395, AH03.4127, BH03.4470, BH03.471, CH07.44 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0613680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0109850.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016888, gene-QYE76_038619 |
| Poaceae | Oryza coarctata | 2 | Oco24G005320, Oco24G005580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g24550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K140200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305366 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G011840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G206100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG010980, gene_TRIDC2BG013430 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G095300.1, TraesCS2B02G110500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb141360_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33303 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5828 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.363, evm.TU.LG17.359 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34870 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.594 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-7574, nbisL1-mrna-7578 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7522 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5604 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.356 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011400 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8446 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-702 |
| Salicaceae | Populus euphratica | 2 | populus_peu02313, populus_peu02320 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632230 |
| Solanaceae | Solanum chilense | 1 | SOLCI001335100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015407 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9911 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1241 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27660.v3.1 |