Basic Information
Locus ID:
Lb6G29930
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 32093876 | 32102878 | + | Lb6G29930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 84,828.44 Da | 50.36 | 62.73 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 8.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 1.7E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 1.7E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 8.3E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 3.26E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 399 | 3.26E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 9.1E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 2.3E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 9.1E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 362 | 400 | 2.3E-16 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 5.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 2.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 372 | 396 | 5.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 2.0E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.461374 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 9.958232 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.461374 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 676 | - | - |
| Coils | Coil | Coil | 71 | 91 | - | - |
| Coils | Coil | Coil | 71 | 91 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_028121028.1 | uncharacterized protein LOC114318363 [Camellia sinensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BTS4 | RanBP2-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_019979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology