Basic Information
Locus ID:
Lb6G29913
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 30186203 | 30188060 | - | Lb6G29913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 55,583.25 Da | 40.39 | 90.92 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 238 | 1.3E-33 | IPR001574 |
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 238 | 1.3E-33 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 6 | 281 | 8.37E-39 | IPR036041 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 6 | 281 | 8.37E-39 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 191 | 3.8E-39 | IPR016138 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 191 | 3.8E-39 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 181 | 201 | 3.4E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 3.4E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 3.4E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 62 | 77 | 3.4E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 62 | 77 | 3.4E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 181 | 201 | 3.4E-7 | IPR017989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011001802.1 | PREDICTED: 60 kDa jasmonate-induced protein-like isoform X4 [Populus euphratica] | 0 |
| TrEMBL | A0A8X7XVS1 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_054486 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology