Basic Information
Locus ID:
Lb6G29885
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 25911805 | 25914364 | - | Lb6G29885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 81,393.64 Da | 40.80 | 70.04 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 260 | 350 | 2.7E-26 | IPR018289 |
| Pfam | PF10551 | MULE transposase domain | 260 | 350 | 2.7E-26 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 68 | 133 | 9.7E-10 | IPR004330 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 68 | 133 | 9.7E-10 | IPR004330 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 694 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019179493.1 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Ipomoea nil] | 0 |
| TrEMBL | A0A7N0RCM3 | Protein FAR1-RELATED SEQUENCE OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619 |
| Amaranthaceae | Suaeda glauca | 69 | Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37147, Lb3G20849, Lb6G29885 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.16888_chr09_+, STRG.24247_chr10_+ |