Basic Information
Locus ID:
Lb6G29882
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 25336320 | 25340399 | + | Lb6G29882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 59,259.43 Da | 56.70 | 60.65 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 149 | 201 | 9.07976E-23 | - |
| CDD | cd09396 | LIM_DA1 | 149 | 201 | 9.07976E-23 | - |
| Pfam | PF00412 | LIM domain | 149 | 202 | 6.0E-7 | IPR001781 |
| Pfam | PF00412 | LIM domain | 149 | 202 | 6.0E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 298 | 520 | 1.3E-97 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 298 | 520 | 1.3E-97 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 175 | 230 | 5.71E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 142 | 174 | 5.9E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 175 | 230 | 5.71E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 142 | 174 | 5.9E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 144 | 208 | 3.6E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 144 | 208 | 3.6E-11 | - |
| SMART | SM00132 | lim_4 | 148 | 200 | 1.6E-6 | IPR001781 |
| SMART | SM00132 | lim_4 | 148 | 200 | 1.6E-6 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 147 | 207 | 10.4644 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 147 | 207 | 10.4644 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 149 | 183 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 149 | 183 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 469 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_010691604.2 | protein DA1-related 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0WSN2 | Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5PIS0 | LIM zinc-binding domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_140550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology