halophFGD

Basic Information

Locus ID: Lb6G29826

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Cell division cycle 20.2, cofactor of APC complex-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	20174292	20177073	+	Lb6G29826

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.12	49,038.39 Da	44.36	73.16	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	168	417	1.72109E-42	-
CDD	cd00200	WD40	168	417	1.72109E-42	-
Pfam	PF00400	WD domain, G-beta repeat	291	331	1.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	245	280	3.4E-6	IPR001680
Pfam	PF12894	Anaphase-promoting complex subunit 4 WD40 domain	163	221	3.1E-7	IPR024977
Pfam	PF00400	WD domain, G-beta repeat	381	416	0.0015	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	381	416	0.0015	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	245	280	3.4E-6	IPR001680
Pfam	PF12894	Anaphase-promoting complex subunit 4 WD40 domain	163	221	3.1E-7	IPR024977
Pfam	PF00400	WD domain, G-beta repeat	291	331	1.6E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	128	416	1.97E-59	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	128	416	1.97E-59	IPR036322
Gene3D	G3DSA:2.130.10.10	-	72	419	4.3E-125	IPR015943
Gene3D	G3DSA:2.130.10.10	-	72	419	4.3E-125	IPR015943
SMART	SM00320	WD40_4	377	416	7.2E-6	IPR001680
SMART	SM00320	WD40_4	241	280	3.2E-8	IPR001680
SMART	SM00320	WD40_4	157	196	2.4E-4	IPR001680
SMART	SM00320	WD40_4	289	331	2.2E-6	IPR001680
SMART	SM00320	WD40_4	334	374	300.0	IPR001680
SMART	SM00320	WD40_4	199	237	0.43	IPR001680
SMART	SM00320	WD40_4	111	152	190.0	IPR001680
SMART	SM00320	WD40_4	334	374	300.0	IPR001680
SMART	SM00320	WD40_4	241	280	3.2E-8	IPR001680
SMART	SM00320	WD40_4	199	237	0.43	IPR001680
SMART	SM00320	WD40_4	377	416	7.2E-6	IPR001680
SMART	SM00320	WD40_4	111	152	190.0	IPR001680
SMART	SM00320	WD40_4	289	331	2.2E-6	IPR001680
SMART	SM00320	WD40_4	157	196	2.4E-4	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	248	289	13.750016	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	164	205	11.845179	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	164	205	11.845179	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	248	280	11.022865	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	248	289	13.750016	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	248	280	11.022865	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	384	417	10.68014	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	164	196	8.702878	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	164	196	8.702878	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	384	417	12.847725	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	384	417	10.68014	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	384	417	12.847725	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	403	417	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	403	417	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03363 (cell division cycle 20, cofactor of APC complex)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33270.1	Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1)
RefSeq	XP_010671158.1	cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9SZA4	Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1
TrEMBL	A0A803L226	ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg13795, jg23407, jg23612, jg2475, jg4861, jg7581, jg9944
Aizoaceae	Mesembryanthemum crystallinum	5	gene_1884, gene_19786, gene_19830, gene_23782, gene_3428
Amaranthaceae	Atriplex hortensis	9	Ah003710, Ah013585, Ah016323, Ah016747, Ah018392, Ah019749 ... Ah019777, Ah030592, Ah035136
Amaranthaceae	Beta vulgaris	4	BVRB_2g024990, BVRB_3g050110, BVRB_3g059510, BVRB_5g101290
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg14872, Sbi_jg21214, Sbi_jg22591, Sbi_jg23660 ... Sbi_jg42699, Sbi_jg45323, Sbi_jg55649, Sbi_jg55650, Sbi_jg59348, Sbi_jg63276, Sbi_jg63277, Sbi_jg7507
Amaranthaceae	Salicornia europaea	5	Seu_jg12526, Seu_jg16477, Seu_jg23608, Seu_jg26203 ... Seu_jg26852
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00001298, GOSA_00003720, GOSA_00004106, GOSA_00016324 ... GOSA_00017938, GOSA_00017939, GOSA_00028113
Amaranthaceae	Suaeda glauca	9	Sgl01113, Sgl06198, Sgl49057, Sgl51866, Sgl57164, Sgl62568 ... Sgl67114, Sgl78620, Sgl81098
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000002444, gene:ENSEOMG00000007121 ... gene:ENSEOMG00000019039, gene:ENSEOMG00000021142, gene:ENSEOMG00000023582, gene:ENSEOMG00000024754, gene:ENSEOMG00000029246, gene:ENSEOMG00000030674, gene:ENSEOMG00000043789, gene:ENSEOMG00000044457
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1BG0018510, CQ.Regalona.r1.2AG0020270 ... CQ.Regalona.r1.3AG0007130, CQ.Regalona.r1.3AG0011920, CQ.Regalona.r1.3AG0012090, CQ.Regalona.r1.3BG0007130, CQ.Regalona.r1.3BG0012120, CQ.Regalona.r1.5AG0008550, CQ.Regalona.r1.5BG0008790
Anacardiaceae	Pistacia vera	5	pistato.v30122150, pistato.v30143130, pistato.v30175700 ... pistato.v30214110, pistato.v30277170
Apiaceae	Apium graveolens	7	Ag10G01169, Ag10G02444, Ag4G02570, Ag5G01293, Ag5G02783 ... Ag6G00640, Ag6G01787
Arecaceae	Cocos nucifera	10	COCNU_04G001670, COCNU_04G015470, COCNU_07G007780 ... COCNU_07G015250, COCNU_10G006120, scaffold000588G000040, scaffold005897G000010, scaffold007404G000010, scaffold010342G000010, scaffold013488G000020
Arecaceae	Phoenix dactylifera	12	gene-LOC103696767, gene-LOC103697077, gene-LOC103700069 ... gene-LOC103702694, gene-LOC103703517, gene-LOC103704161, gene-LOC103714521, gene-LOC103714523, gene-LOC103723184, gene-LOC103723254, gene-LOC113460903, gene-LOC120107482
Asparagaceae	Asparagus officinalis	12	AsparagusV1_01.1710.V1.1, AsparagusV1_02.119.V1.1 ... AsparagusV1_02.1325.V1.1, AsparagusV1_02.1329.V1.1, AsparagusV1_02.1595.V1.1, AsparagusV1_04.1026.V1.1, AsparagusV1_04.2421.V1.1, AsparagusV1_10.1116.V1.1, AsparagusV1_10.1180.V1.1, AsparagusV1_10.1181.V1.1, AsparagusV1_10.402.V1.1, AsparagusV1_10.403.V1.1
Asteraceae	Flaveria trinervia	6	Ftri14G13731, Ftri17G11293, Ftri18G20007, Ftri1G13993 ... Ftri1G15627, Ftri1G33518
Brassicaceae	Arabidopsis thaliana	9	AT4G11920.1, AT4G22910.1, AT4G33260.1, AT4G33270.1 ... AT5G13840.1, AT5G26900.1, AT5G27080.1, AT5G27570.1, AT5G27945.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10002840m.g.v1.0, Thhalv10013409m.g.v1.0 ... Thhalv10025096m.g.v1.0, Thhalv10025162m.g.v1.0, Thhalv10028629m.g.v1.0, Thhalv10028650m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp3g29750.v2.2, Sp5g22460.v2.2, Sp6g05570.v2.2 ... Sp6g30160.v2.2, Sp7g20980.v2.2, Sp7g31010.v2.2
Brassicaceae	Brassica nigra	15	BniB02g027530.2N, BniB02g046060.2N, BniB02g080120.2N ... BniB02g086220.2N, BniB03g009560.2N, BniB04g026660.2N, BniB05g004790.2N, BniB05g014260.2N, BniB05g054820.2N, BniB05g058590.2N, BniB07g006090.2N, BniB08g006560.2N, BniB08g023990.2N, BniB08g037020.2N, BniB08g049550.2N
Casuarinaceae	Casuarina equisetifolia	17	Ceq02G1133, Ceq02G2189, Ceq02G2397, Ceq02G2399, Ceq02G2479 ... Ceq03G0486, Ceq03G1377, Ceq03G1716, Ceq03G1729, Ceq03G1732, Ceq04G1014, Ceq07G1406, Ceq08G1075, Ceq08G1280, Ceq08G1285, Ceq09G0944, Ceq09G1940
Casuarinaceae	Casuarina glauca	19	Cgl02G1176, Cgl02G2266, Cgl02G2268, Cgl02G2472, Cgl02G2474 ... Cgl02G2574, Cgl03G0595, Cgl03G1490, Cgl03G1510, Cgl03G1835, Cgl03G1848, Cgl04G1145, Cgl07G1490, Cgl08G1308, Cgl08G1313, Cgl09G0850, Cgl09G1026, Cgl09G1038, Cgl09G2120
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno05g19020, gene.Cymno07g08990, gene.Cymno07g09560 ... gene.Cymno15g05310, gene.Cymno18g02680, gene.Cymno18g05210
Dunaliellaceae	Dunaliella salina	2	Dusal.0246s00012.v1.0, Dusal.0396s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	18	gene.Thate01g25850, gene.Thate02g03760, gene.Thate04g19330 ... gene.Thate04g19490, gene.Thate04g19530, gene.Thate04g19560, gene.Thate04g19570, gene.Thate04g19580, gene.Thate04g19610, gene.Thate04g19620, gene.Thate04g19640, gene.Thate04g19650, gene.Thate04g19660, gene.Thate04g19690, gene.Thate04g19700, gene.Thate06g00570, gene.Thate08g09710, gene.Thate09g04250
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3993
Nitrariaceae	Nitraria sibirica	10	evm.TU.Contig13.4, evm.TU.LG02.1078, evm.TU.LG02.1079 ... evm.TU.LG02.1099, evm.TU.LG02.1106, evm.TU.LG02.1749, evm.TU.LG03.1996, evm.TU.LG05.520, evm.TU.LG08.257, evm.TU.LG10.1318
Plantaginaceae	Plantago ovata	9	Pov_00014381, Pov_00014395, Pov_00014398, Pov_00019137 ... Pov_00029045, Pov_00031514, Pov_00040130, Pov_00040697, Pov_00040698
Plumbaginaceae	Limonium bicolor	6	Lb2G10028, Lb2G12294, Lb2G14182, Lb3G20332, Lb6G29826 ... Lb7G33798
Poaceae	Echinochloa crus-galli	17	AH01.5126, AH02.4654, AH07.1167, AH07.2413, AH07.3126 ... AH09.2178, BH01.5085, BH01.5262, BH02.4720, BH07.1242, BH07.2953, CH02.4740, CH07.1026, CH07.2297, CH07.3029, CH08.1173, CH09.2490
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0048210, gene-QOZ80_1BG0098110 ... gene-QOZ80_2AG0135820, gene-QOZ80_2AG0142130, gene-QOZ80_2BG0191350, gene-QOZ80_2BG0197640, gene-QOZ80_3AG0231690, gene-QOZ80_3BG0296230, gene-QOZ80_4AG0305180, gene-QOZ80_4BG0336140, gene-QOZ80_5BG0424940
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0193900.1, HORVU.MOREX.r3.3HG0328740.1 ... HORVU.MOREX.r3.4HG0412380.1, HORVU.MOREX.r3.5HG0474580.1, HORVU.MOREX.r3.5HG0491790.1, HORVU.MOREX.r3.6HG0606520.1
Poaceae	Lolium multiflorum	9	gene-QYE76_004629, gene-QYE76_007025, gene-QYE76_007904 ... gene-QYE76_024598, gene-QYE76_024602, gene-QYE76_030415, gene-QYE76_041261, gene-QYE76_059051, gene-QYE76_071321
Poaceae	Oryza coarctata	9	Oco01G031070, Oco02G032230, Oco03G019030, Oco04G019790 ... Oco05G001370, Oco06G001330, Oco07G014900, Oco08G014400, Oco17G001150
Poaceae	Oryza sativa	5	LOC_Os01g74146.1, LOC_Os02g47180.2, LOC_Os03g03150.2 ... LOC_Os04g51110.1, LOC_Os09g06680.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G500300, gene-BS78_03G418900 ... gene-BS78_04G115700, gene-BS78_04G244600, gene-BS78_06G215200
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0100578, Pt_Chr0100623, Pt_Chr0201701, Pt_Chr0203883 ... Pt_Chr0305281, Pt_Chr0306629, Pt_Chr0403530, Pt_Chr0500199, Pt_Chr0601129, Pt_Chr0702544, Pt_Chr0702564
Poaceae	Sporobolus alterniflorus	15	Chr01G038560, Chr02G000120, Chr04G005920, Chr05G034720 ... Chr06G004400, Chr07G005690, Chr09G016120, Chr09G022620, Chr0G006040, Chr12G000840, Chr15G005800, Chr15G010260, Chr18G011800, Chr25G003990, Chr30G003870
Poaceae	Thinopyrum elongatum	8	Tel2E01G751200, Tel3E01G892000, Tel4E01G567700 ... Tel5E01G316800, Tel5E01G435500, Tel6E01G208100, Tel6E01G208200, Tel6E01G495000
Poaceae	Triticum dicoccoides	18	gene_TRIDC1BG027460, gene_TRIDC2AG063230 ... gene_TRIDC2BG014760, gene_TRIDC2BG067170, gene_TRIDC3AG074680, gene_TRIDC3BG085980, gene_TRIDC4BG058300, gene_TRIDC5AG030480, gene_TRIDC5AG041180, gene_TRIDC5AG073420, gene_TRIDC5BG009520, gene_TRIDC5BG032070, gene_TRIDC5BG044920, gene_TRIDC6AG010550, gene_TRIDC6AG041300, gene_TRIDC6BG048260, gene_TRIDC7AG000830, gene_TRIDC7AG062470
Poaceae	Triticum aestivum	21	TraesCS1B02G166800.1, TraesCS2A02G440000.2 ... TraesCS2B02G461400.1, TraesCS2D02G118700.1.cds1, TraesCS2D02G438800.1, TraesCS3A02G527600.1, TraesCS3B02G595600.1, TraesCS3D02G533000.1, TraesCS4B02G346200.2, TraesCS4D02G341200.1, TraesCS5A02G197800.2, TraesCS5A02G272600.1, TraesCS5B02G185900.1, TraesCS5B02G272800.1, TraesCS5D02G193100.1, TraesCS5D02G280600.1, TraesCS6A02G085400.1, TraesCS6A02G268900.1, TraesCS6B02G296200.1, TraesCS6D02G246000.1, TraesCS7B02G353500.1
Poaceae	Zea mays	12	Zm00001eb001710_P001, Zm00001eb060290_P001 ... Zm00001eb097820_P001, Zm00001eb111190_P001, Zm00001eb139790_P002, Zm00001eb188180_P002, Zm00001eb237680_P001, Zm00001eb251660_P001, Zm00001eb267060_P001, Zm00001eb340310_P001, Zm00001eb340510_P001, Zm00001eb403730_P001
Poaceae	Zoysia japonica	8	nbis-gene-10751, nbis-gene-22148, nbis-gene-22751 ... nbis-gene-3099, nbis-gene-4694, nbis-gene-49889, nbis-gene-55547, nbis-gene-9027
Poaceae	Zoysia macrostachya	6	Zma_g14205, Zma_g16954, Zma_g20370, Zma_g2200, Zma_g4548 ... Zma_g9443
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.639, evm.TU.LG04.3459, evm.TU.LG05.899 ... evm.TU.LG09.1220, evm.TU.LG10.271, evm.TU.LG16.127, evm.TU.LG17.264, evm.TU.LG25.435
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g39170, gene.Posoc05g17140, gene.Posoc07g01630 ... gene.Posoc07g07540
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_11_RagTag.1218, evm.TU.Scaffold_1_RagTag.523 ... evm.TU.Scaffold_11_RagTag.387, evm.TU.Scaffold_14_RagTag.257, evm.TU.Scaffold_1_RagTag.573, evm.TU.Scaffold_1_RagTag.591, evm.TU.Scaffold_2_RagTag.1088, evm.TU.Scaffold_4_RagTag.1741
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-12405, nbisL1-mrna-12516, nbisL1-mrna-14039 ... nbisL1-mrna-18125, nbisL1-mrna-25995, nbisL1-mrna-3512, nbisL1-mrna-4099, nbisL1-mrna-7583
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-10474, nbisL1-mrna-14688, nbisL1-mrna-14689 ... nbisL1-mrna-18646, nbisL1-mrna-3914, nbisL1-mrna-4941, nbisL1-mrna-6320, nbisL1-mrna-7640
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-10190, nbisL1-mrna-12787, nbisL1-mrna-14191 ... nbisL1-mrna-4543, nbisL1-mrna-5580, nbisL1-mrna-5599, nbisL1-mrna-8456
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000005l.122, evm.TU.utg000007l.214 ... evm.TU.utg000008l.973, evm.TU.utg000009l.593, evm.TU.utg000010l.265, evm.TU.utg000012l.334, evm.TU.utg000012l.352
Rhizophoraceae	Kandelia obovata	5	Maker00005317, Maker00010108, Maker00011073, Maker00011231 ... Maker00018310
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-12501, nbisL1-mrna-16089, nbisL1-mrna-17805 ... nbisL1-mrna-2080, nbisL1-mrna-483, nbisL1-mrna-599, nbisL1-mrna-8451, nbisL1-mrna-8467
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-10826, nbisL1-mrna-16742, nbisL1-mrna-19548 ... nbisL1-mrna-5668, nbisL1-mrna-678, nbisL1-mrna-697, nbisL1-mrna-8856, nbisL1-mrna-9444
Salicaceae	Populus euphratica	10	populus_peu03479, populus_peu06448, populus_peu16001 ... populus_peu19499, populus_peu20299, populus_peu20300, populus_peu25456, populus_peu25975, populus_peu28999, populus_peu34320
Solanaceae	Lycium barbarum	7	gene-LOC132602453, gene-LOC132602815, gene-LOC132603861 ... gene-LOC132606178, gene-LOC132611169, gene-LOC132612366, gene-LOC132634994
Solanaceae	Solanum chilense	7	SOLCI000095100, SOLCI001335300, SOLCI003510700 ... SOLCI003665300, SOLCI005873900, SOLCI007115600, SOLCI007477300
Solanaceae	Solanum pennellii	7	gene-LOC107005736, gene-LOC107014111, gene-LOC107014781 ... gene-LOC107021291, gene-LOC107023794, gene-LOC107027259, gene-LOC107027952
Tamaricaceae	Reaumuria soongarica	5	gene_12780, gene_15003, gene_3937, gene_9831, gene_9917
Tamaricaceae	Tamarix chinensis	4	TC01G4558, TC05G1754, TC06G2782, TC08G0788
Zosteraceae	Zostera marina	8	Zosma01g25400.v3.1, Zosma02g06420.v3.1, Zosma02g15830.v3.1 ... Zosma03g28830.v3.1, Zosma04g22570.v3.1, Zosma05g08740.v3.1, Zosma06g02260.v3.1, Zosma06g08510.v3.1