Basic Information
Locus ID:
Lb6G29807
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 17802517 | 17830160 | - | Lb6G29807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 96,658.00 Da | 48.51 | 76.10 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 671 | 833 | 7.99999E-52 | - |
| CDD | cd02674 | Peptidase_C19R | 671 | 833 | 7.99999E-52 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 390 | 832 | 3.3E-36 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 390 | 832 | 3.3E-36 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 293 | 835 | 9.22E-90 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 293 | 835 | 9.22E-90 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 287 | 481 | 7.4E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 287 | 481 | 7.4E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 653 | 845 | 3.9E-53 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 653 | 845 | 3.9E-53 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 295 | 835 | 43.479343 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 295 | 835 | 43.479343 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 779 | 796 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 296 | 311 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 779 | 796 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 296 | 311 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 862 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021860333.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Spinacia oleracea] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MJX1 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology