Basic Information
Locus ID:
Lb6G29696
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 8708372 | 8712261 | + | Lb6G29696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 46,188.91 Da | 63.13 | 67.38 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 143 | 207 | 8.52887E-23 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 143 | 207 | 8.52887E-23 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 143 | 210 | 2.9E-14 | IPR009071 |
| Pfam | PF00505 | HMG (high mobility group) box | 143 | 210 | 2.9E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 135 | 215 | 2.09E-20 | IPR036910 |
| SUPERFAMILY | SSF47095 | HMG-box | 135 | 215 | 2.09E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 127 | 225 | 3.4E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 127 | 225 | 3.4E-21 | IPR036910 |
| SMART | SM00398 | hmgende2 | 142 | 211 | 2.8E-19 | IPR009071 |
| SMART | SM00398 | hmgende2 | 142 | 211 | 2.8E-19 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 143 | 210 | 15.433458 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 143 | 210 | 15.433458 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 137 | - | - |
| Coils | Coil | Coil | 192 | 219 | - | - |
| Coils | Coil | Coil | 192 | 219 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745860.1 | high mobility group B protein 15-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LTQ0 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology