Basic Information
Locus ID:
Lb5G29606
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 312729942 | 312734548 | + | Lb5G29606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 69,089.94 Da | 47.80 | 84.14 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 403 | 536 | 2.91686E-64 | - |
| CDD | cd17920 | DEXHc_RecQ | 205 | 402 | 2.88248E-98 | - |
| CDD | cd17920 | DEXHc_RecQ | 205 | 402 | 2.88248E-98 | - |
| CDD | cd18794 | SF2_C_RecQ | 403 | 536 | 2.91686E-64 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 213 | 382 | 2.3E-15 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 539 | 609 | 9.6E-10 | IPR032284 |
| Pfam | PF16124 | RecQ zinc-binding | 539 | 609 | 9.6E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 419 | 526 | 1.9E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 213 | 382 | 2.3E-15 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 419 | 526 | 1.9E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 547 | 7.73E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 547 | 7.73E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 402 | 7.3E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 403 | 611 | 3.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 403 | 611 | 3.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 402 | 7.3E-82 | IPR027417 |
| SMART | SM00490 | helicmild6 | 445 | 527 | 8.1E-23 | IPR001650 |
| SMART | SM00490 | helicmild6 | 445 | 527 | 8.1E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 207 | 411 | 2.1E-26 | IPR014001 |
| SMART | SM00487 | ultradead3 | 207 | 411 | 2.1E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 205 | 612 | 4.7E-149 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 205 | 612 | 4.7E-149 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 417 | 567 | 18.251896 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 219 | 395 | 19.908747 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 219 | 395 | 19.908747 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 417 | 567 | 18.251896 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 334 | 343 | - | IPR002464 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 334 | 343 | - | IPR002464 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269491.1 | ATP-dependent DNA helicase Q-like 1 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5B6H2 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_029249 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology