Basic Information
Locus ID:
Lb5G29581
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ras GTPase-activating protein-binding protein 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 305129869 | 305137915 | - | Lb5G29581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 62,990.61 Da | 40.97 | 61.99 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 67 | 188 | 7.67533E-39 | IPR018222 |
| CDD | cd00780 | NTF2 | 67 | 188 | 7.67533E-39 | IPR018222 |
| CDD | cd00590 | RRM_SF | 384 | 440 | 9.83729E-10 | - |
| CDD | cd00590 | RRM_SF | 384 | 440 | 9.83729E-10 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 384 | 446 | 4.6E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 384 | 446 | 4.6E-9 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 71 | 186 | 1.8E-24 | IPR002075 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 71 | 186 | 1.8E-24 | IPR002075 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 377 | 456 | 3.66E-15 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 67 | 187 | 3.02E-33 | IPR032710 |
| SUPERFAMILY | SSF54427 | NTF2-like | 67 | 187 | 3.02E-33 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 377 | 456 | 3.66E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 360 | 461 | 7.3E-12 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 61 | 193 | 1.3E-36 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 360 | 461 | 7.3E-12 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 61 | 193 | 1.3E-36 | - |
| SMART | SM00360 | rrm1_1 | 383 | 453 | 6.8E-8 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 383 | 453 | 6.8E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 382 | 457 | 10.87185 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 71 | 186 | 29.056412 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 382 | 457 | 10.87185 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 71 | 186 | 29.056412 | IPR018222 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25150.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_010680681.1 | nuclear transport factor 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L7S0 | G3BP-like protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology