halophFGD

Basic Information

Locus ID: Lb5G29502

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: proteinaceous RNase P 1, chloroplastic mitochondrial-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	281643692	281647444	-	Lb5G29502

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.36	97,681.94 Da	52.94	68.53	-0.61

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF16953	Protein-only RNase P	559	784	2.8E-70	IPR031595
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	370	517	2.5E-54	IPR033443
Pfam	PF16953	Protein-only RNase P	559	784	2.8E-70	IPR031595
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	370	517	2.5E-54	IPR033443
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	220	280	1.5E-14	IPR033443
Pfam	PF17177	Pentacotripeptide-repeat region of PRORP	220	280	1.5E-14	IPR033443
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	368	787	1.6E-194	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	368	787	1.6E-194	IPR011990
Gene3D	G3DSA:3.40.50.11980	-	576	750	1.6E-194	-
Gene3D	G3DSA:3.40.50.11980	-	576	750	1.6E-194	-
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	430	464	9.602157	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	430	464	9.602157	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	287	310	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	290	310	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	802	820	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	98	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	133	176	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	336	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	802	831	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	211	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	214	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	802	820	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	802	831	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	211	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	133	176	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	98	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	98	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	214	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	290	310	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	336	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	98	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	287	310	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K18213 (proteinaceous RNase P [EC:3.1.26.5])

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32230.1	proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs.
RefSeq	XP_034699718.1	proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Vitis riparia]
Swiss-Prot	Q66GI4	Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1
TrEMBL	F6HH14	ribonuclease P OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03700 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg15506, jg2678, jg6727, jg8162
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12959, gene_6797, gene_9092
Amaranthaceae	Atriplex hortensis	1	Ah028940
Amaranthaceae	Beta vulgaris	4	BVRB_2g036660, BVRB_6g131580, BVRB_7g176330, BVRB_8g196710
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg20800, Sbi_jg22969, Sbi_jg24993, Sbi_jg26968 ... Sbi_jg33581, Sbi_jg8847
Amaranthaceae	Salicornia europaea	4	Seu_jg16835, Seu_jg19755, Seu_jg19756, Seu_jg8290
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002952, GOSA_00007788, GOSA_00009315
Amaranthaceae	Suaeda glauca	9	Sgl24756, Sgl29904, Sgl42231, Sgl47008, Sgl62014, Sgl66574 ... Sgl73289, Sgl75145, Sgl76809
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000008297, gene:ENSEOMG00000009035 ... gene:ENSEOMG00000019237, gene:ENSEOMG00000020817, gene:ENSEOMG00000031468, gene:ENSEOMG00000039046, gene:ENSEOMG00000039245, gene:ENSEOMG00000045114
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0012770, CQ.Regalona.r1.7AG0000680 ... CQ.Regalona.r1.7AG0012700, CQ.Regalona.r1.8AG0020020, CQ.Regalona.r1.8BG0022420, CQ.Regalona.r1.9BG0005080
Anacardiaceae	Pistacia vera	3	pistato.v30056760, pistato.v30165180, pistato.v30256680
Apiaceae	Apium graveolens	3	Ag2G01699, Ag2G02454, Ag6G02803
Arecaceae	Cocos nucifera	3	COCNU_01G020190, COCNU_02G009740, COCNU_09G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103696071, gene-LOC103702617, gene-LOC103703076 ... gene-LOC120112218
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1544.V1.1, AsparagusV1_02.835.V1.1 ... AsparagusV1_10.561.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G29821, Ftri2G13306, Ftri8G28346
Brassicaceae	Arabidopsis thaliana	4	AT2G16650.1, AT2G32230.1, AT4G21900.1, AT5G60430.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10016443m.g.v1.0, Thhalv10022627m.g.v1.0 ... Thhalv10024761m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g30103.v2.2, Sp4g14590.v2.2, Sp7g20050.v2.2
Brassicaceae	Brassica nigra	3	BniB03g064020.2N, BniB05g015180.2N, BniB06g021700.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G2251, Ceq05G1779, Ceq06G1507
Casuarinaceae	Casuarina glauca	3	Cgl04G2452, Cgl05G1768, Cgl06G1562
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno07g01930, gene.Cymno14g00030, gene.Cymno16g02490
Dunaliellaceae	Dunaliella salina	1	Dusal.0024s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g16820, gene.Thate03g09540, gene.Thate05g13080 ... gene.Thate08g05150, gene.Thate09g15890
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2014, evm.TU.LG07.1097, evm.TU.LG10.371
Plantaginaceae	Plantago ovata	3	Pov_00003855, Pov_00015830, Pov_00040020
Plumbaginaceae	Limonium bicolor	5	Lb2G10943, Lb2G11508, Lb3G16161, Lb5G29367, Lb5G29502
Poaceae	Echinochloa crus-galli	9	AH02.4633, AH06.2502, AH07.1196, BH02.4696, BH06.2302 ... BH07.1274, CH06.2525, CH07.1224, Contig926_1.9
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0047980, gene-QOZ80_1BG0097820 ... gene-QOZ80_2AG0109090, gene-QOZ80_2BG0162580, gene-QOZ80_4AG0298190, gene-QOZ80_4BG0328850
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0217620.1, HORVU.MOREX.r3.3HG0326700.1
Poaceae	Lolium multiflorum	7	gene-QYE76_017031, gene-QYE76_020592, gene-QYE76_020735 ... gene-QYE76_021937, gene-QYE76_035957, gene-QYE76_058543, gene-QYE76_059239
Poaceae	Oryza coarctata	5	Oco01G030860, Oco02G031980, Oco03G007520, Oco07G020170 ... Oco08G019520
Poaceae	Oryza sativa	3	LOC_Os01g73690.1, LOC_Os02g17360.1, LOC_Os04g59600.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G416400, gene-BS78_04G117600 ... gene-BS78_06G297200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102500, Pt_Chr0102529, Pt_Chr0103030, Pt_Chr0201951 ... Pt_Chr0601012
Poaceae	Sporobolus alterniflorus	8	Chr02G000320, Chr02G020050, Chr05G034470, Chr06G031090 ... Chr15G022520, Chr25G000090, Chr26G019080, Chr30G000290
Poaceae	Thinopyrum elongatum	3	Tel2E01G1039700, Tel3E01G869700, Tel7E01G839600
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG081700, gene_TRIDC2BG090760 ... gene_TRIDC3AG073450
Poaceae	Triticum aestivum	6	TraesCS2A02G560400.1, TraesCS2D02G520400.1.cds1 ... TraesCS2D02G569800.1, TraesCS3A02G518500.1, TraesCS3B02G585700.1, TraesCS3D02G525800.1
Poaceae	Zea mays	4	Zm00001eb056850_P001, Zm00001eb140030_P001 ... Zm00001eb237440_P004, Zm00001eb410940_P001
Poaceae	Zoysia japonica	3	nbis-gene-23287, nbis-gene-28073, nbis-gene-34125
Poaceae	Zoysia macrostachya	3	Zma_g12004, Zma_g15353, Zma_g20755
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.2848, evm.TU.LG06.1676, evm.TU.LG07.2 ... evm.TU.LG07.88, evm.TU.LG11.1029, evm.TU.LG23.1049
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g18910, gene.Posoc06g04520, gene.Posoc09g07560
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_13_RagTag.474, evm.TU.Scaffold_3_RagTag.816 ... evm.TU.Scaffold_4_RagTag.1935
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-25638, nbisL1-mrna-30622, nbisL1-mrna-30628 ... nbisL1-mrna-3643
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14985, nbisL1-mrna-6642, nbisL1-mrna-8023
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15878, nbisL1-mrna-4703, nbisL1-mrna-6493
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.1105, evm.TU.utg000015l.257 ... evm.TU.utg000019l.712
Rhizophoraceae	Kandelia obovata	2	Maker00001053, Maker00015378
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14779, nbisL1-mrna-4170, nbisL1-mrna-5177
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-1217, nbisL1-mrna-13248, nbisL1-mrna-22140
Salicaceae	Populus euphratica	6	populus_peu08594, populus_peu09794, populus_peu21837 ... populus_peu22145, populus_peu24693, populus_peu36743
Solanaceae	Lycium barbarum	2	gene-LOC132604288, gene-LOC132644014
Solanaceae	Solanum chilense	3	SOLCI001911000, SOLCI004312600, SOLCI006787800
Solanaceae	Solanum pennellii	3	gene-LOC107023400, gene-LOC107023757, gene-LOC107026091
Tamaricaceae	Reaumuria soongarica	4	STRG.3780_chr02_-, gene_2479, gene_3564, gene_8013
Tamaricaceae	Tamarix chinensis	4	TC03G1807, TC04G1178, TC10G1422, TC11G0943
Zosteraceae	Zostera marina	3	Zosma02g18610.v3.1, Zosma04g24060.v3.1, Zosma05g04030.v3.1