Basic Information
Locus ID:
Lb5G29356
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 257278453 | 257282084 | - | Lb5G29356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 71,742.01 Da | 31.22 | 84.70 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 29 | 365 | 9.68584E-118 | - |
| CDD | cd02879 | GH18_plant_chitinase_class_V | 29 | 365 | 9.68584E-118 | - |
| Pfam | PF00069 | Protein kinase domain | 466 | 642 | 5.5E-35 | IPR000719 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 359 | 6.5E-66 | IPR001223 |
| Pfam | PF00069 | Protein kinase domain | 466 | 642 | 5.5E-35 | IPR000719 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 359 | 6.5E-66 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 376 | 3.16E-56 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 264 | 330 | 2.66E-8 | IPR029070 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 264 | 330 | 2.66E-8 | IPR029070 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 442 | 643 | 3.96E-61 | IPR011009 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 376 | 3.16E-56 | IPR017853 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 442 | 643 | 3.96E-61 | IPR011009 |
| Gene3D | G3DSA:3.10.50.10 | - | 263 | 330 | 2.5E-86 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 263 | 330 | 2.5E-86 | IPR029070 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 424 | 538 | 6.6E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 539 | 645 | 3.7E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 424 | 538 | 6.6E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 539 | 645 | 3.7E-30 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 361 | 2.5E-86 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 43 | 361 | 2.5E-86 | - |
| SMART | SM00220 | serkin_6 | 463 | 645 | 1.8E-10 | IPR000719 |
| SMART | SM00636 | 2g34 | 27 | 359 | 2.7E-65 | IPR011583 |
| SMART | SM00636 | 2g34 | 27 | 359 | 2.7E-65 | IPR011583 |
| SMART | SM00220 | serkin_6 | 463 | 645 | 1.8E-10 | IPR000719 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 375 | 58.491348 | IPR001223 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 375 | 58.491348 | IPR001223 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 463 | 645 | 33.007851 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 463 | 645 | 33.007851 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 584 | 596 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 584 | 596 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_012440619.2 | cysteine-rich receptor-like protein kinase 19 [Gossypium raimondii] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2N4Z9 | Protein kinase domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G030200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33011 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014646 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25416, Sbi_jg9258 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19333, Seu_jg19334 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011117 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41832, Sgl46632 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032170 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0019370, CQ.Regalona.r1.8BG0023030 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179160 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G06819, Ftri7G12214 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq03G2520, Ceq03G2521, Ceq03G2524, Ceq03G2703 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl03G2660, Cgl03G2661, Cgl03G2662, Cgl06G0541 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.224 |
| Plumbaginaceae | Limonium bicolor | 13 | Lb0G37026, Lb0G37435, Lb1G01286, Lb1G01287, Lb1G01293 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.644 |
| Rhizophoraceae | Bruguiera sexangula | 9 | evm.TU.51077.1, evm.TU.51077.3, evm.TU.51077.4 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-25268, nbisL1-mrna-25269, nbisL1-mrna-25271 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13176 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-4958, nbisL1-mrna-4959, nbisL1-mrna-4960 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1294, evm.TU.utg000008l.1295 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000167, Maker00001187, Maker00001564 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1887, nbisL1-mrna-1888 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-22244, nbisL1-mrna-22245, nbisL1-mrna-22246 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu05630, populus_peu05631 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132602011, gene-LOC132602094, gene-LOC132603025 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI001943000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024563 |