Basic Information
Locus ID:
Lb5G29321
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 251441627 | 251447575 | + | Lb5G29321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 71,134.70 Da | 42.52 | 89.71 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 125 | 8.0176E-45 | - |
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 125 | 8.0176E-45 | - |
| Pfam | PF03000 | NPH3 family | 216 | 481 | 9.0E-96 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 216 | 481 | 9.0E-96 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 117 | 8.63E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 117 | 8.63E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 176 | 4.2E-10 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 176 | 4.2E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 10.819732 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 216 | 505 | 95.857697 | IPR027356 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 216 | 505 | 95.857697 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 10.819732 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 651 | - | - |
| Coils | Coil | Coil | 553 | 587 | - | - |
| Coils | Coil | Coil | 553 | 587 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017983502.1 | PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Theobroma cacao] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1R3G8M9 | BTB/POZ-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_36484 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology