halophFGD

Basic Information

Locus ID: Lb5G29223

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Short Name: HMT3

Description: Homocysteine s-methyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	238303711	238306814	+	Lb5G29223

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.38	36,979.38 Da	40.63	89.13	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02574	Homocysteine S-methyltransferase	33	342	2.2E-78	IPR003726
Pfam	PF02574	Homocysteine S-methyltransferase	33	342	2.2E-78	IPR003726
SUPERFAMILY	SSF82282	Homocysteine S-methyltransferase	22	343	1.83E-84	IPR036589
SUPERFAMILY	SSF82282	Homocysteine S-methyltransferase	22	343	1.83E-84	IPR036589
Gene3D	G3DSA:3.20.20.330	-	23	342	7.1E-104	IPR036589
Gene3D	G3DSA:3.20.20.330	-	23	342	7.1E-104	IPR036589
PIRSF	PIRSF037505	BHMT	22	218	8.4E-6	IPR017226
PIRSF	PIRSF037505	BHMT	308	344	0.65	IPR017226
PIRSF	PIRSF037505	BHMT	308	344	0.65	IPR017226
PIRSF	PIRSF037505	BHMT	22	218	8.4E-6	IPR017226
ProSiteProfiles	PS50970	Homocysteine-binding domain profile.	20	343	47.972282	IPR003726
ProSiteProfiles	PS50970	Homocysteine-binding domain profile.	20	343	47.972282	IPR003726

Gene Ontology

Biological Process:

GO:0009086 (methionine biosynthetic process)

Molecular Function:

GO:0008270 (zinc ion binding) GO:0047150 (betaine-homocysteine S-methyltransferase activity)

KEGG Pathway

KO Term:

K00547 (homocysteine S-methyltransferase [EC:2.1.1.10])

Pathway:

ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00650 (S-Adenosyl-L-methionine + L-Homocysteine <=> S-Adenosyl-L-homocysteine + L-Methionine)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22740.1	homocysteine S-methyltransferase 3. homocysteine S-methyltransferase (HMT3)
RefSeq	XP_021636786.1	homocysteine S-methyltransferase 3 [Hevea brasiliensis]
Swiss-Prot	Q8LAX0	Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HMT3 PE=1 SV=2
TrEMBL	A0A1R3ISV0	Homocysteine S-methyltransferase OS=Corchorus olitorius OX=93759 GN=COLO4_21528 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg27872, jg34936, jg8775
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18455, gene_19378
Amaranthaceae	Atriplex hortensis	2	Ah000340, Ah025809
Amaranthaceae	Beta vulgaris	3	BVRB_5g119700, BVRB_6g141850, BVRB_6g141890
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13844, Sbi_jg13880, Sbi_jg30758, Sbi_jg52077 ... Sbi_jg58501
Amaranthaceae	Salicornia europaea	2	Seu_jg28374, Seu_jg9768
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004946, GOSA_00028751
Amaranthaceae	Suaeda glauca	4	Sgl34411, Sgl39821, Sgl53774, Sgl59038
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003682, gene:ENSEOMG00000003959 ... gene:ENSEOMG00000007419, gene:ENSEOMG00000022836, gene:ENSEOMG00000023562, gene:ENSEOMG00000026173
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0025100, CQ.Regalona.r1.5BG0026600 ... CQ.Regalona.r1.6AG0014590, CQ.Regalona.r1.6BG0015270
Anacardiaceae	Pistacia vera	3	pistato.v30026840, pistato.v30225400, pistato.v30236380
Apiaceae	Apium graveolens	3	Ag1G01842, Ag5G02028, Ag9G02124
Arecaceae	Cocos nucifera	3	COCNU_02G005220, COCNU_03G001340, COCNU_06G015720
Arecaceae	Phoenix dactylifera	3	gene-LOC103711353, gene-LOC103716281, gene-LOC103718093
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1550.V1.1, AsparagusV1_03.526.V1.1 ... AsparagusV1_08.2236.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G13166, Ftri12G21440, Ftri5G28153
Brassicaceae	Arabidopsis thaliana	3	AT3G22740.1, AT3G25900.1, AT3G63250.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004584m.g.v1.0, Thhalv10006074m.g.v1.0 ... Thhalv10021051m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15140.v2.2, Sp3g20460.v2.2, Sp5g00280.v2.2
Brassicaceae	Brassica nigra	4	BniB01g039780.2N, BniB02g066520.2N, BniB06g061110.2N ... BniB08g076720.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2067, Ceq07G0326
Casuarinaceae	Casuarina glauca	2	Cgl03G2206, Cgl07G0333
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02630, gene.Cymno15g05560
Dunaliellaceae	Dunaliella salina	1	Dusal.0343s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g40470, gene.Thate08g10640, gene.Thate09g21320
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4988
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.547, evm.TU.LG04.1122, evm.TU.LG11.994
Plantaginaceae	Plantago ovata	2	Pov_00008008, Pov_00019266
Plumbaginaceae	Limonium bicolor	5	Lb0G37672, Lb1G01526, Lb1G01534, Lb1G06615, Lb5G29223
Poaceae	Echinochloa crus-galli	10	AH01.4497, AH02.3438, AH05.4002, BH02.3530, BH05.4099 ... CH01.5115, CH02.3060, CH02.3279, CH05.4316, Contig192.136
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0035170, gene-QOZ80_1BG0085260 ... gene-QOZ80_3AG0239150, gene-QOZ80_3BG0288840, gene-QOZ80_5AG0397290, gene-QOZ80_5BG0445800
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0292600.1, HORVU.MOREX.r3.4HG0395940.1 ... HORVU.MOREX.r3.5HG0431780.1
Poaceae	Lolium multiflorum	6	gene-QYE76_000790, gene-QYE76_000832, gene-QYE76_000836 ... gene-QYE76_042498, gene-QYE76_056201, gene-QYE76_069716
Poaceae	Oryza coarctata	8	Oco01G021540, Oco02G022040, Oco05G006740, Oco06G006930 ... Oco19G004490, Oco20G004460, Oco23G010110, Oco24G009870
Poaceae	Oryza sativa	4	LOC_Os01g56610.1, LOC_Os03g12110.1, LOC_Os10g28630.1 ... LOC_Os12g41390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G435000, gene-BS78_08G139500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101795, Pt_Chr0104179, Pt_Chr0601554, Pt_Chr0601585
Poaceae	Sporobolus alterniflorus	6	Chr01G027650, Chr04G018750, Chr06G019620, Chr12G011750 ... Chr19G007890, Chr27G008770
Poaceae	Thinopyrum elongatum	3	Tel3E01G504400, Tel4E01G414500, Tel5E01G117400
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG045400, gene_TRIDC3BG051520 ... gene_TRIDC4AG008590, gene_TRIDC4BG042550, gene_TRIDC5AG008130, gene_TRIDC5BG010410
Poaceae	Triticum aestivum	9	TraesCS3A02G322600.1, TraesCS3B02G343000.1 ... TraesCS3D02G308900.1, TraesCS4A02G065100.1, TraesCS4B02G242700.1, TraesCS4D02G242100.1, TraesCS5A02G053100.1, TraesCS5B02G063300.1, TraesCS5D02G064400.1
Poaceae	Zea mays	4	Zm00001eb031360_P001, Zm00001eb135800_P002 ... Zm00001eb151780_P001, Zm00001eb399940_P001
Poaceae	Zoysia japonica	3	nbis-gene-11785, nbis-gene-2447, nbis-gene-47548
Poaceae	Zoysia macrostachya	2	Zma_g1762, Zma_g26101
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1102, evm.TU.LG03.1977, evm.TU.LG06.1788 ... evm.TU.LG09.874, evm.TU.LG11.1141, evm.TU.LG14.274
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g09920, gene.Posoc08g00580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.81, evm.TU.Scaffold_9_RagTag.937
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1498, nbisL1-mrna-1504, nbisL1-mrna-21272
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18085, nbisL1-mrna-2976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17425, nbisL1-mrna-18375
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.47, evm.TU.utg000003l.512
Rhizophoraceae	Kandelia obovata	2	Maker00004650, Maker00009283
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11675, nbisL1-mrna-1499
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2848, nbisL1-mrna-5119
Salicaceae	Populus euphratica	5	populus_peu07412, populus_peu15073, populus_peu21028 ... populus_peu21423, populus_peu32737
Solanaceae	Lycium barbarum	2	gene-LOC132609295, gene-LOC132610829
Solanaceae	Solanum chilense	1	SOLCI002373400
Solanaceae	Solanum pennellii	2	gene-LOC107029752, gene-LOC107031665
Tamaricaceae	Reaumuria soongarica	3	STRG.16866_chr09_+, gene_11029, gene_8441
Tamaricaceae	Tamarix chinensis	3	TC04G0169, TC07G2657, TC12G1367
Zosteraceae	Zostera marina	1	Zosma02g16710.v3.1