Basic Information
Locus ID:
Lb5G29150
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 230351995 | 230354784 | + | Lb5G29150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 73,238.70 Da | 43.99 | 87.89 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 212 | 249 | 7.02321E-4 | IPR018392 |
| CDD | cd00118 | LysM | 212 | 249 | 7.02321E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 434 | 663 | 1.3E-21 | IPR000719 |
| Pfam | PF01476 | LysM domain | 220 | 257 | 0.0014 | IPR018392 |
| Pfam | PF01476 | LysM domain | 220 | 257 | 0.0014 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 434 | 663 | 1.3E-21 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 667 | 6.6E-48 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 667 | 6.6E-48 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 385 | 475 | 5.5E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 198 | 273 | 4.0E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 477 | 677 | 1.1E-31 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 198 | 273 | 4.0E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 477 | 677 | 1.1E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 385 | 475 | 5.5E-14 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 212 | 256 | 9.78389 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 360 | 678 | 20.866743 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 212 | 256 | 9.78389 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 360 | 678 | 20.866743 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 292 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_022880301.1 | protein LYK5 [Olea europaea var. sylvestris] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J0DM33 | Protein kinase superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_00g0056110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology