HalophFGD

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Basic Information
Locus ID: Lb5G28947
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr05 215590832 215615757 + Lb5G28947
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.81 496,818.75 Da 43.61 94.64 -0.10
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd01201 PH_BEACH 2654 2818 5.79546E-27 IPR023362
CDD cd06071 Beach 2854 3133 1.30699E-155 IPR000409
CDD cd06071 Beach 2854 3133 1.30699E-155 IPR000409
CDD cd01201 PH_BEACH 2654 2818 5.79546E-27 IPR023362
Pfam PF01535 PPR repeat 3721 3748 0.087 IPR002885
Pfam PF13041 PPR repeat family 4051 4098 2.3E-7 IPR002885
Pfam PF01535 PPR repeat 3624 3647 0.08 IPR002885
Pfam PF01535 PPR repeat 3954 3983 0.015 IPR002885
Pfam PF14432 DYW family of nucleic acid deaminases 4333 4456 3.3E-38 IPR032867
Pfam PF13041 PPR repeat family 3750 3796 1.4E-9 IPR002885
Pfam PF01535 PPR repeat 4157 4181 0.0095 IPR002885
Pfam PF00400 WD domain, G-beta repeat 3204 3233 0.0029 IPR001680
Pfam PF00400 WD domain, G-beta repeat 3204 3233 0.0029 IPR001680
Pfam PF00400 WD domain, G-beta repeat 3248 3284 0.032 IPR001680
Pfam PF00400 WD domain, G-beta repeat 3248 3284 0.032 IPR001680
Pfam PF14432 DYW family of nucleic acid deaminases 4333 4456 3.3E-38 IPR032867
Pfam PF01535 PPR repeat 3926 3952 0.038 IPR002885
Pfam PF01535 PPR repeat 3926 3952 0.038 IPR002885
Pfam PF13041 PPR repeat family 3648 3695 4.2E-7 IPR002885
Pfam PF13041 PPR repeat family 3850 3894 2.6E-7 IPR002885
Pfam PF14844 PH domain associated with Beige/BEACH 2761 2815 4.1E-8 IPR023362
Pfam PF13041 PPR repeat family 3648 3695 4.2E-7 IPR002885
Pfam PF02138 Beige/BEACH domain 2854 3133 9.8E-118 IPR000409
Pfam PF01535 PPR repeat 3721 3748 0.087 IPR002885
Pfam PF13041 PPR repeat family 4051 4098 2.3E-7 IPR002885
Pfam PF13041 PPR repeat family 3750 3796 1.4E-9 IPR002885
Pfam PF13041 PPR repeat family 3850 3894 2.6E-7 IPR002885
Pfam PF01535 PPR repeat 4157 4181 0.0095 IPR002885
Pfam PF01535 PPR repeat 3954 3983 0.015 IPR002885
Pfam PF02138 Beige/BEACH domain 2854 3133 9.8E-118 IPR000409
Pfam PF14844 PH domain associated with Beige/BEACH 2761 2815 4.1E-8 IPR023362
Pfam PF01535 PPR repeat 3624 3647 0.08 IPR002885
SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1055 1240 2.72E-10 IPR013320
SUPERFAMILY SSF48371 ARM repeat 686 1018 3.95E-7 IPR016024
SUPERFAMILY SSF48371 ARM repeat 686 1018 3.95E-7 IPR016024
SUPERFAMILY SSF81837 BEACH domain 2845 3133 2.49E-121 IPR036372
SUPERFAMILY SSF50978 WD40 repeat-like 3174 3450 3.1E-29 IPR036322
SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1055 1240 2.72E-10 IPR013320
SUPERFAMILY SSF50729 PH domain-like 2654 2819 9.22E-17 -
SUPERFAMILY SSF50729 PH domain-like 2654 2819 9.22E-17 -
SUPERFAMILY SSF81837 BEACH domain 2845 3133 2.49E-121 IPR036372
SUPERFAMILY SSF50978 WD40 repeat-like 3174 3450 3.1E-29 IPR036322
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3547 3707 3.5E-23 IPR011990
Gene3D G3DSA:1.25.10.10 - 670 1029 1.2E-5 IPR011989
Gene3D G3DSA:2.130.10.10 - 3199 3491 1.3E-27 IPR015943
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3912 4049 3.0E-6 IPR011990
Gene3D G3DSA:2.60.120.200 - 1055 1202 1.0E-6 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3912 4049 3.0E-6 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3547 3707 3.5E-23 IPR011990
Gene3D G3DSA:2.30.29.30 - 2654 2815 3.9E-9 IPR011993
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 4085 4365 2.3E-31 IPR011990
Gene3D G3DSA:2.130.10.10 - 3199 3491 1.3E-27 IPR015943
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3708 3804 8.7E-21 IPR011990
Gene3D G3DSA:1.10.1540.10 BEACH domain 2843 3133 1.8E-136 IPR036372
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3805 3911 9.8E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3708 3804 8.7E-21 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 4085 4365 2.3E-31 IPR011990
Gene3D G3DSA:2.30.29.30 - 2654 2815 3.9E-9 IPR011993
Gene3D G3DSA:1.10.1540.10 BEACH domain 2843 3133 1.8E-136 IPR036372
Gene3D G3DSA:1.25.10.10 - 670 1029 1.2E-5 IPR011989
Gene3D G3DSA:2.60.120.200 - 1055 1202 1.0E-6 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 3805 3911 9.8E-19 IPR011990
SMART SM00320 WD40_4 3193 3234 1.5E-4 IPR001680
SMART SM00320 WD40_4 3404 3443 0.81 IPR001680
SMART SM00320 WD40_4 3245 3284 8.3E-6 IPR001680
SMART SM00320 WD40_4 3245 3284 8.3E-6 IPR001680
SMART SM01026 Beach_2 2853 3133 1.5E-205 IPR000409
SMART SM01026 Beach_2 2853 3133 1.5E-205 IPR000409
SMART SM00320 WD40_4 3404 3443 0.81 IPR001680
SMART SM00320 WD40_4 3193 3234 1.5E-4 IPR001680
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 4054 4088 8.0E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3752 3785 2.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3752 3785 2.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 4054 4088 8.0E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3650 3683 4.2E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3853 3886 6.6E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3650 3683 4.2E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 3853 3886 6.6E-5 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3750 3784 11.377887 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 4052 4086 10.150222 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3952 3986 9.240434 IPR002885
ProSiteProfiles PS50197 BEACH domain profile. 2841 3133 137.870712 IPR000409
ProSiteProfiles PS51783 BEACH-type PH domain profile. 2651 2816 30.054348 IPR023362
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3851 3885 11.191545 IPR002885
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 3252 3293 10.909469 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 3209 3235 9.773251 IPR001680
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3820 3850 8.516988 IPR002885
ProSiteProfiles PS50197 BEACH domain profile. 2841 3133 137.870712 IPR000409
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3820 3850 8.516988 IPR002885
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 3252 3293 10.909469 IPR001680
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3750 3784 11.377887 IPR002885
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 3209 3235 9.773251 IPR001680
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3648 3682 10.632519 IPR002885
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 3252 3287 8.676514 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 3252 3287 8.676514 -
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 4052 4086 10.150222 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3648 3682 10.632519 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3952 3986 9.240434 IPR002885
ProSiteProfiles PS51783 BEACH-type PH domain profile. 2651 2816 30.054348 IPR023362
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 3851 3885 11.191545 IPR002885
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 3271 3285 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 3271 3285 - IPR019775
MobiDBLite mobidb-lite consensus disorder prediction 19 55 - -
MobiDBLite mobidb-lite consensus disorder prediction 19 55 - -
MobiDBLite mobidb-lite consensus disorder prediction 462 494 - -
MobiDBLite mobidb-lite consensus disorder prediction 19 57 - -
MobiDBLite mobidb-lite consensus disorder prediction 462 494 - -
MobiDBLite mobidb-lite consensus disorder prediction 19 57 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding) GO:0008270 (zinc ion binding)
KEGG Pathway
KO Term:
K22262 (WD repeat and FYVE domain-containing protein 3)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G03060.1 Beige/BEACH domain ;WD domain, G-beta repeat protein. Encodes a WD/BEACH domain protein involved in cell morphogenesis. 0
RefSeq XP_023922808.1 protein SPIRRIG [Quercus suber] 0
Swiss-Prot F4HZB2 Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1 0
TrEMBL A0A6A4LTQ7 BEACH-type PH domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_07461 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg35353, jg37846, jg37847, jg8753
Aizoaceae Mesembryanthemum crystallinum 1 gene_13532
Amaranthaceae Atriplex hortensis 3 Ah000300, Ah000308, Ah000311
Amaranthaceae Beta vulgaris 2 BVRB_5g120020, BVRB_5g120070
Amaranthaceae Salicornia bigelovii 5 Sbi_jg31613, Sbi_jg31614, Sbi_jg31620, Sbi_jg57659 ...
Sbi_jg57663
Amaranthaceae Salicornia europaea 2 Seu_jg25335, Seu_jg25338
Amaranthaceae Suaeda aralocaspica 2 GOSA_00025834, GOSA_00025839
Amaranthaceae Suaeda glauca 4 Sgl54271, Sgl54274, Sgl59610, Sgl59613
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000005857, gene:ENSEOMG00000021099 ...
gene:ENSEOMG00000022663, gene:ENSEOMG00000025013
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.5AG0025350, CQ.Regalona.r1.5BG0026880 ...
CQ.Regalona.r1.5BG0026910
Anacardiaceae Pistacia vera 2 pistato.v30026580, pistato.v30034790
Apiaceae Apium graveolens 1 Ag9G02107
Arecaceae Cocos nucifera 1 COCNU_03G001520
Arecaceae Phoenix dactylifera 1 gene-LOC103723915
Asparagaceae Asparagus officinalis 2 AsparagusV1_08.1927.V1.1, AsparagusV1_08.1928.V1.1
Asteraceae Flaveria trinervia 2 Ftri12G26736, Ftri15G17043
Brassicaceae Arabidopsis thaliana 2 AT1G03060.1, AT4G02660.1
Brassicaceae Eutrema salsugineum 1 Thhalv10006519m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g02060.v2.2, Sp6g02580.v2.2
Brassicaceae Brassica nigra 3 BniB02g001080.2N, BniB03g038490.2N, BniB08g039630.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq06G2063
Casuarinaceae Casuarina glauca 1 Cgl06G2178
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno01g01080
Hydrocharitaceae Thalassia testudinum 2 gene.Thate02g28170, gene.Thate08g10760
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-2608
Nitrariaceae Nitraria sibirica 1 evm.TU.LG04.1143
Plantaginaceae Plantago ovata 3 Pov_00007941, Pov_00007942, Pov_00034934
Plumbaginaceae Limonium bicolor 1 Lb5G28947
Poaceae Echinochloa crus-galli 3 BH01.780, CH01.773, Contig309.117
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_3AG0216630, gene-QOZ80_3BG0261900
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.5HG0509920.1
Poaceae Oryza coarctata 2 Oco05G023310, Oco06G024200
Poaceae Oryza sativa 1 LOC_Os03g53280.1
Poaceae Paspalum vaginatum 1 gene-BS78_01G084400
Poaceae Puccinellia tenuiflora 1 Pt_Chr0107118
Poaceae Sporobolus alterniflorus 5 Chr01G005510, Chr04G028420, Chr07G027370, Chr09G009540 ...
Chr12G037870
Poaceae Thinopyrum elongatum 1 Tel5E01G612000
Poaceae Triticum dicoccoides 2 gene_TRIDC5AG056030, gene_TRIDC5BG060060
Poaceae Triticum aestivum 3 TraesCS5A02G383300.1, TraesCS5B02G387800.2 ...
TraesCS5D02G392900.1
Poaceae Zea mays 1 Zm00001eb056940_P001
Poaceae Zoysia japonica 1 nbis-gene-16119
Poaceae Zoysia macrostachya 1 Zma_g2818
Portulacaceae Portulaca oleracea 5 evm.TU.LG01.2847, evm.TU.LG02.1123, evm.TU.LG02.1126 ...
evm.TU.LG09.845, evm.TU.LG09.850
Posidoniaceae Posidonia oceanica 2 gene.Posoc03g02270, gene.Posoc07g10210
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60381.2, evm.TU.60382.2 ...
evm.TU.Scaffold_5_RagTag.1036
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-11316, nbisL1-mrna-21258
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-10698
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-10353
Rhizophoraceae Kandelia candel 1 evm.TU.utg000006l.334
Rhizophoraceae Kandelia obovata 1 Maker00014130
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-1488, nbisL1-mrna-9953
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-19742, nbisL1-mrna-5109
Salicaceae Populus euphratica 5 populus_peu15098, populus_peu15099, populus_peu15100 ...
populus_peu32758, populus_peu32759
Solanaceae Lycium barbarum 1 gene-LOC132610773
Solanaceae Solanum chilense 1 SOLCI005213800
Solanaceae Solanum pennellii 1 gene-LOC107031012
Tamaricaceae Reaumuria soongarica 1 gene_16417
Tamaricaceae Tamarix chinensis 1 TC07G2621
Zosteraceae Zostera marina 6 Zosma02g18550.v3.1, Zosma04g00330.v3.1, Zosma04g00340.v3.1 ...
Zosma05g17850.v3.1, Zosma06g26620.v3.1, Zosma06g26630.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.