halophFGD

Basic Information

Locus ID: Lb5G28867

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: ABC transporter C family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	211572955	211577899	+	Lb5G28867

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.32	87,681.90 Da	42.16	99.62	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18579	ABC_6TM_ABCC_D1	1	182	8.80029E-61	IPR044746
CDD	cd03250	ABCC_MRP_domain1	209	411	6.88719E-105	-
CDD	cd18579	ABC_6TM_ABCC_D1	1	182	8.80029E-61	IPR044746
CDD	cd18580	ABC_6TM_ABCC_D2	447	616	1.59742E-50	IPR044726
CDD	cd03250	ABCC_MRP_domain1	209	411	6.88719E-105	-
CDD	cd18580	ABC_6TM_ABCC_D2	447	616	1.59742E-50	IPR044726
Pfam	PF00664	ABC transporter transmembrane region	1	148	3.8E-17	IPR011527
Pfam	PF00664	ABC transporter transmembrane region	1	148	3.8E-17	IPR011527
Pfam	PF00005	ABC transporter	658	758	5.6E-18	IPR003439
Pfam	PF00664	ABC transporter transmembrane region	445	485	1.3E-6	IPR011527
Pfam	PF00005	ABC transporter	236	369	9.4E-17	IPR003439
Pfam	PF00664	ABC transporter transmembrane region	445	485	1.3E-6	IPR011527
Pfam	PF00005	ABC transporter	236	369	9.4E-17	IPR003439
Pfam	PF00005	ABC transporter	658	758	5.6E-18	IPR003439
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	1	190	7.46E-18	IPR036640
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	224	411	2.97E-44	IPR027417
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	1	190	7.46E-18	IPR036640
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	445	621	1.11E-22	IPR036640
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	631	771	5.9E-33	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	224	411	2.97E-44	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	631	771	5.9E-33	IPR027417
SUPERFAMILY	SSF90123	ABC transporter transmembrane region	445	621	1.11E-22	IPR036640
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	426	493	7.2E-10	IPR036640
Gene3D	G3DSA:3.40.50.300	-	625	784	2.6E-41	IPR027417
Gene3D	G3DSA:3.40.50.300	-	208	415	1.6E-56	IPR027417
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	497	624	8.0E-15	IPR036640
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	1	194	5.7E-30	IPR036640
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	1	194	5.7E-30	IPR036640
Gene3D	G3DSA:3.40.50.300	-	625	784	2.6E-41	IPR027417
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	497	624	8.0E-15	IPR036640
Gene3D	G3DSA:3.40.50.300	-	208	415	1.6E-56	IPR027417
Gene3D	G3DSA:1.20.1560.10	ABC transporter type 1, transmembrane domain	426	493	7.2E-10	IPR036640
SMART	SM00382	AAA_5	667	786	3.2	IPR003593
SMART	SM00382	AAA_5	244	417	3.5E-10	IPR003593
SMART	SM00382	AAA_5	244	417	3.5E-10	IPR003593
SMART	SM00382	AAA_5	667	786	3.2	IPR003593
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	1	155	21.464905	IPR011527
ProSiteProfiles	PS50893	ATP-binding cassette, ABC transporter-type domain profile.	220	439	17.507135	IPR003439
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	446	492	10.115448	IPR011527
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	1	155	21.464905	IPR011527
ProSiteProfiles	PS50929	ABC transporter integral membrane type-1 fused domain profile.	446	492	10.115448	IPR011527
ProSiteProfiles	PS50893	ATP-binding cassette, ABC transporter-type domain profile.	220	439	17.507135	IPR003439
ProSitePatterns	PS00211	ABC transporters family signature.	342	356	-	IPR017871
ProSitePatterns	PS00211	ABC transporters family signature.	342	356	-	IPR017871

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0005524 (ATP binding) GO:0140359 (ABC-type transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3])

Pathway:

ko01523 (Antifolate resistance) map01523 (Antifolate resistance) ko02010 (ABC transporters) map02010 (ABC transporters) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G60160.1	multidrug resistance-associated protein 9. member of MRP subfamily
RefSeq	XP_010691965.1	putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9M1C7	ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2
TrEMBL	A0A803LIL0	ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg20168, jg26747, jg34547, jg35463, jg35464, jg35677, jg8650 ... jg37788, jg9554
Aizoaceae	Mesembryanthemum crystallinum	9	gene_11143, gene_1270, gene_13803, gene_13804, gene_13805 ... gene_26186, gene_26187, gene_3543, gene_6425
Amaranthaceae	Atriplex hortensis	9	Ah001083, Ah010622, Ah010623, Ah010624, Ah013833, Ah022649 ... Ah022662, Ah023370, Ah029154
Amaranthaceae	Beta vulgaris	7	BVRB_5g116010, BVRB_5g116040, BVRB_5g116050, BVRB_6g151560 ... BVRB_7g165990, BVRB_9g220080, BVRB_9g220100
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg1105, Sbi_jg11531, Sbi_jg11532, Sbi_jg29048 ... Sbi_jg3268, Sbi_jg35483, Sbi_jg42732, Sbi_jg45357, Sbi_jg46471, Sbi_jg46472, Sbi_jg46474, Sbi_jg50013
Amaranthaceae	Salicornia europaea	6	Seu_jg11220, Seu_jg1675, Seu_jg20780, Seu_jg20784 ... Seu_jg3600, Seu_jg6662
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000085, GOSA_00002580, GOSA_00005215, GOSA_00006744 ... GOSA_00022880, GOSA_00023939
Amaranthaceae	Suaeda glauca	24	Sgl11523, Sgl16900, Sgl17021, Sgl35092, Sgl40477, Sgl45566 ... Sgl45567, Sgl50348, Sgl50349, Sgl51256, Sgl55965, Sgl55966, Sgl56394, Sgl56560, Sgl61136, Sgl61137, Sgl65894, Sgl65915, Sgl70193, Sgl74258, Sgl74274, Sgl74339, Sgl77827, Sgl77885
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000013989, gene:ENSEOMG00000017494 ... gene:ENSEOMG00000025699, gene:ENSEOMG00000035824, gene:ENSEOMG00000036344, gene:ENSEOMG00000037168, gene:ENSEOMG00000043496, gene:ENSEOMG00000048466, gene:ENSEOMG00000051950, gene:ENSEOMG00000052601
Amaranthaceae	Chenopodium quinoa	18	CQ.Regalona.r1.1AG0004340, CQ.Regalona.r1.1AG0007980 ... CQ.Regalona.r1.2BG0021480, CQ.Regalona.r1.2BG0021490, CQ.Regalona.r1.2BG0027880, CQ.Regalona.r1.5AG0021980, CQ.Regalona.r1.5BG0023400, CQ.Regalona.r1.6AG0006370, CQ.Regalona.r1.6BG0003550, CQ.Regalona.r1.6BG0014320, CQ.Regalona.r1.7BG0010280, CQ.Regalona.r1.7BG0010290, CQ.Regalona.r1.7BG0013630, CQ.Regalona.r1.9AG0011100, CQ.Regalona.r1.9AG0014340, CQ.Regalona.r1.9AG0014350, CQ.Regalona.r1.9BG0011320, CQ.Regalona.r1.9BG0011330
Anacardiaceae	Pistacia vera	13	pistato.v30001070, pistato.v30015290, pistato.v30153700 ... pistato.v30153710, pistato.v30155190, pistato.v30155200, pistato.v30155210, pistato.v30155220, pistato.v30156990, pistato.v30157000, pistato.v30228030, pistato.v30282000, pistato.v30282010
Apiaceae	Apium graveolens	13	Ag10G00405, Ag10G00847, Ag11G03740, Ag2G01280, Ag2G01283 ... Ag2G01284, Ag2G01709, Ag5G02280, Ag6G02781, Ag7G00348, Ag7G02293, Ag9G02858, AgUnG00712
Arecaceae	Cocos nucifera	5	COCNU_07G004230, COCNU_07G009110, COCNU_08G003370 ... scaffold030856G000020, scaffold030856G000040
Arecaceae	Phoenix dactylifera	5	gene-LOC103697619, gene-LOC103697840, gene-LOC103703562 ... gene-LOC103708769, gene-LOC103711867
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.2436.V1.1, AsparagusV1_01.2439.V1.1 ... AsparagusV1_04.1745.V1.1, AsparagusV1_04.245.V1.1, AsparagusV1_04.511.V1.1, AsparagusV1_10.1874.V1.1, AsparagusV1_10.1875.V1.1
Asteraceae	Flaveria trinervia	8	Ftri12G23933, Ftri14G09505, Ftri14G23598, Ftri15G19944 ... Ftri16G14674, Ftri7G11446, Ftri7G28108, Ftri8G05646
Brassicaceae	Arabidopsis thaliana	7	AT1G04120.1, AT1G71330.1, AT3G13080.1, AT3G13090.1 ... AT3G13100.1, AT3G60160.1, AT3G60970.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001878m.g.v1.0, Thhalv10005742m.g.v1.0 ... Thhalv10006549m.g.v1.0, Thhalv10019893m.g.v1.0, Thhalv10019894m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g02940.v2.2, Sp3g11250.v2.2, Sp3g11260.v2.2 ... Sp3g11270.v2.2, Sp3g33590.v2.2, Sp5g03050.v2.2
Brassicaceae	Brassica nigra	9	BniB01g052050.2N, BniB04g024430.2N, BniB05g052710.2N ... BniB06g046700.2N, BniB06g053730.2N, BniB07g026740.2N, BniB07g026750.2N, BniB07g026770.2N, BniB07g055840.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq01G1445, Ceq01G1446, Ceq05G0984, Ceq06G1252, Ceq07G1281 ... Ceq07G1282
Casuarinaceae	Casuarina glauca	12	Cgl01G1609, Cgl01G1610, Cgl01G1611, Cgl01G1612, Cgl01G1613 ... Cgl05G0980, Cgl05G1063, Cgl05G1068, Cgl06G0322, Cgl06G1314, Cgl07G1354, Cgl07G1358
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g06570, gene.Cymno07g04250, gene.Cymno07g13060 ... gene.Cymno16g05750
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g23780, gene.Thate05g13860, gene.Thate05g21650 ... gene.Thate08g00610
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3195, nbisL1-mrna-3904
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG03.709, evm.TU.LG04.1372, evm.TU.LG04.9 ... evm.TU.LG05.1997
Plantaginaceae	Plantago ovata	11	Pov_00005378, Pov_00012276, Pov_00012277, Pov_00015178 ... Pov_00022241, Pov_00029519, Pov_00030964, Pov_00032476, Pov_00032534, Pov_00032536, Pov_00041533
Plumbaginaceae	Limonium bicolor	9	Lb1G00953, Lb4G23730, Lb4G23731, Lb4G25782, Lb4G25788 ... Lb4G25789, Lb5G27455, Lb5G28864, Lb5G28867
Poaceae	Echinochloa crus-galli	24	AH01.4115, AH01.5266, AH02.1865, AH02.1868, AH02.477 ... AH03.287, AH07.1558, AH09.2102, BH01.4418, BH01.4945, BH02.1855, BH02.498, BH03.368, BH09.2267, BH09.845, CH01.4676, CH01.5550, CH02.2087, CH02.2093, CH02.541, CH03.437, CH09.2412, CH09.530, CH09.918
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0011520, gene-QOZ80_1AG0019120 ... gene-QOZ80_1BG0060160, gene-QOZ80_1BG0069220, gene-QOZ80_3AG0233330, gene-QOZ80_3BG0294680, gene-QOZ80_4AG0305960, gene-QOZ80_4BG0336930, gene-QOZ80_4BG0351310, gene-QOZ80_6AG0510650, gene-QOZ80_7AG0556360, gene-QOZ80_7BG0587320
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0196780.1, HORVU.MOREX.r3.2HG0196800.1 ... HORVU.MOREX.r3.3HG0241380.1, HORVU.MOREX.r3.3HG0302160.1, HORVU.MOREX.r3.3HG0305140.1, HORVU.MOREX.r3.4HG0396580.1.CDS1, HORVU.MOREX.r3.4HG0412040.1
Poaceae	Lolium multiflorum	20	gene-QYE76_014643, gene-QYE76_017221, gene-QYE76_017222 ... gene-QYE76_045832, gene-QYE76_045833, gene-QYE76_045834, gene-QYE76_050582, gene-QYE76_050585, gene-QYE76_050606, gene-QYE76_050612, gene-QYE76_050614, gene-QYE76_050615, gene-QYE76_050618, gene-QYE76_050620, gene-QYE76_050621, gene-QYE76_050624, gene-QYE76_056333, gene-QYE76_056372, gene-QYE76_057142, gene-QYE76_070864
Poaceae	Oryza coarctata	9	Oco01G003010, Oco01G027580, Oco02G028650, Oco04G008330 ... Oco05G002610, Oco06G002560, Oco07G014400, Oco07G014410, Oco08G013870
Poaceae	Oryza sativa	7	LOC_Os01g07870.1, LOC_Os01g67580.1, LOC_Os02g18670.1 ... LOC_Os02g18700.1, LOC_Os03g04920.1, LOC_Os04g49890.1, LOC_Os04g49900.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G484900, gene-BS78_02G039800 ... gene-BS78_03G046200, gene-BS78_03G149500, gene-BS78_05G118100, gene-BS78_06G207300, gene-BS78_06G207500
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0100120, Pt_Chr0100229, Pt_Chr0200367, Pt_Chr0200368 ... Pt_Chr0200369, Pt_Chr0205468, Pt_Chr0301571, Pt_Chr0302092, Pt_Chr0504413, Pt_Chr0504475, Pt_Chr0600266, Pt_Chr0600312
Poaceae	Sporobolus alterniflorus	16	Chr01G037580, Chr02G019760, Chr03G005210, Chr03G008450 ... Chr04G004690, Chr05G010770, Chr06G012330, Chr07G006850, Chr08G005680, Chr10G020600, Chr12G001840, Chr15G014160, Chr23G003050, Chr23G014710, Chr26G014230, Chr29G010370
Poaceae	Thinopyrum elongatum	10	Tel1E01G500300, Tel2E01G766700, Tel3E01G216200 ... Tel3E01G499900, Tel3E01G579400, Tel3E01G624000, Tel4E01G402700, Tel4E01G430400, Tel4E01G430500, Tel4E01G563500
Poaceae	Triticum dicoccoides	17	gene_TRIDC1AG046120, gene_TRIDC1BG052180 ... gene_TRIDC2AG064430, gene_TRIDC2AG064450, gene_TRIDC2BG064630, gene_TRIDC2BG068750, gene_TRIDC2BG068770, gene_TRIDC3AG016150, gene_TRIDC3AG052200, gene_TRIDC3AG056080, gene_TRIDC3BG020980, gene_TRIDC3BG058750, gene_TRIDC3BG062740, gene_TRIDC4AG007040, gene_TRIDC4BG044040, gene_TRIDC4BG057910, gene_TRIDC5AG073120
Poaceae	Triticum aestivum	26	TraesCS1A02G310100.1, TraesCS1B02G321200.1 ... TraesCS1D02G309600.1, TraesCS2A02G451300.1, TraesCS2A02G451500.1, TraesCS2B02G442400.1, TraesCS2B02G472800.1, TraesCS2B02G473000.1, TraesCS2D02G420400.1, TraesCS2D02G451100.2, TraesCS2D02G451300.1, TraesCS3A02G129000.1, TraesCS3A02G362500.1, TraesCS3A02G393500.1, TraesCS3B02G148100.2, TraesCS3B02G395000.2, TraesCS3B02G425500.1, TraesCS3D02G129900.2, TraesCS3D02G356300.2, TraesCS3D02G387200.1, TraesCS4A02G051100.1, TraesCS4B02G253200.1, TraesCS4B02G343800.2, TraesCS4D02G253300.3, TraesCS4D02G339000.2, TraesCS5A02G512500.2
Poaceae	Zea mays	7	Zm00001eb003490_P001, Zm00001eb072510_P001 ... Zm00001eb314450_P001, Zm00001eb314470_P001, Zm00001eb336810_P001, Zm00001eb402410_P003, Zm00001eb428300_P001
Poaceae	Zoysia japonica	6	nbis-gene-13157, nbis-gene-13158, nbis-gene-2941 ... nbis-gene-41956, nbis-gene-4536, nbis-gene-6840
Poaceae	Zoysia macrostachya	2	Zma_g20326, Zma_g7975
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.528, evm.TU.LG03.1366, evm.TU.LG04.1029 ... evm.TU.LG04.235, evm.TU.LG07.1754, evm.TU.LG07.1755, evm.TU.LG12.11, evm.TU.LG13.95, evm.TU.LG15.1433, evm.TU.LG18.1182, evm.TU.LG18.727, evm.TU.LG20.697, evm.TU.LG26.301
Posidoniaceae	Posidonia oceanica	5	gene.Posoc02g15890, gene.Posoc05g01300, gene.Posoc08g15700 ... gene.Posoc08g15730, gene.Posoc09g00820
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.21, evm.TU.Scaffold_15_RagTag.836 ... evm.TU.Scaffold_5_RagTag.1151, evm.TU.Scaffold_7_RagTag.90
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-11625, nbisL1-mrna-19647, nbisL1-mrna-24241 ... nbisL1-mrna-27025, nbisL1-mrna-27212, nbisL1-mrna-28416, nbisL1-mrna-7124
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11343, nbisL1-mrna-11475, nbisL1-mrna-2183 ... nbisL1-mrna-3998, nbisL1-mrna-6125
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10246, nbisL1-mrna-14526, nbisL1-mrna-15566 ... nbisL1-mrna-22320
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000005l.34, add.evm.TU.utg000028l.23 ... add.evm.TU.utg000028l.24, add.evm.TU.utg000034l.13, evm.TU.utg000001l.459, evm.TU.utg000005l.362, evm.TU.utg000006l.415, evm.TU.utg000028l.55
Rhizophoraceae	Kandelia obovata	6	Maker00002597, Maker00008913, Maker00010037, Maker00010486 ... Maker00013143, Maker00019079
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11199, nbisL1-mrna-224, nbisL1-mrna-8014 ... nbisL1-mrna-9881
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11981, nbisL1-mrna-17688, nbisL1-mrna-19855 ... nbisL1-mrna-22099, nbisL1-mrna-22612
Salicaceae	Populus euphratica	14	populus_peu00799, populus_peu00800, populus_peu00801 ... populus_peu00810, populus_peu00811, populus_peu05895, populus_peu07650, populus_peu21692, populus_peu26657, populus_peu26717, populus_peu30771, populus_peu35067, populus_peu35080, populus_peu37218
Solanaceae	Lycium barbarum	5	gene-LOC132610372, gene-LOC132616633, gene-LOC132619127 ... gene-LOC132635271, gene-LOC132641229
Solanaceae	Solanum chilense	4	SOLCI001954200, SOLCI004087700, SOLCI004205800 ... SOLCI007444600
Solanaceae	Solanum pennellii	3	gene-LOC107020823, gene-LOC107026039, gene-LOC107031366
Tamaricaceae	Reaumuria soongarica	5	STRG.200_chr01_+, gene_11105, gene_3245, gene_3367 ... gene_9165
Tamaricaceae	Tamarix chinensis	4	TC01G0537, TC10G0867, TC10G2306, TC11G0402
Zosteraceae	Zostera marina	6	Zosma01g09670.v3.1, Zosma04g09370.v3.1, Zosma04g09380.v3.1 ... Zosma05g11310.v3.1, Zosma05g27300.v3.1, Zosma05g27310.v3.1