Basic Information
Locus ID:
Lb5G28853
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 210398913 | 210400815 | - | Lb5G28853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 15,342.94 Da | 42.83 | 101.57 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 92 | 137 | 3.5E-12 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 92 | 137 | 3.5E-12 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 90 | 136 | 2.75E-13 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 90 | 136 | 2.75E-13 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 77 | 139 | 3.7E-15 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 77 | 139 | 3.7E-15 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 92 | 140 | 11.649828 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 92 | 140 | 11.649828 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 93 | 108 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 93 | 108 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_039070266.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Hibiscus syriacus] | 0 |
| Q2R4I5 | Inactive ubiquitin-specific protease 5 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A3BKE2 | Ubiquitin carboxyl-terminal hydrolase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110183pilonHSYRG00080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology