Basic Information
Locus ID:
Lb5G28736
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase CHIP-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 203585120 | 203587019 | - | Lb5G28736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 23,607.53 Da | 40.57 | 85.00 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16654 | RING-Ubox_CHIP | 124 | 190 | 3.10439E-41 | - |
| CDD | cd16654 | RING-Ubox_CHIP | 124 | 190 | 3.10439E-41 | - |
| Pfam | PF04564 | U-box domain | 124 | 196 | 1.5E-26 | IPR003613 |
| Pfam | PF04564 | U-box domain | 124 | 196 | 1.5E-26 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 198 | 7.77E-27 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 198 | 7.77E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 200 | 5.9E-27 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 200 | 5.9E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 127 | 190 | 7.4E-22 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 127 | 190 | 7.4E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 123 | 197 | 25.999279 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 123 | 197 | 25.999279 | IPR003613 |
| Coils | Coil | Coil | 68 | 88 | - | - |
| Coils | Coil | Coil | 68 | 88 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07370.1 | carboxyl terminus of HSC70-interacting protein. Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. | 0 |
| RefSeq | XP_011089636.1 | E3 ubiquitin-protein ligase CHIP isoform X2 [Sesamum indicum] | 0 |
| Q9SRS9 | E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana OX=3702 GN=CHIP PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZGC2 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16783, jg36077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5427 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26634, Sbi_jg33928 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011841 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73933, Sgl73940, Sgl77447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007491, gene:ENSEOMG00000036203 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0009360, CQ.Regalona.r1.9BG0009590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013840 |
| Apiaceae | Apium graveolens | 2 | Ag11G03079, Ag7G00095 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G021570, COCNU_02G012130 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701608, gene-LOC103706090, gene-LOC103715638 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.484.V1.1, AsparagusV1_02.537.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G01476, Ftri12G17654, Ftri9G00783 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021313m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056540.2N, BniB03g024050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1534 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1564 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0119s00028.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g01940, gene.Thate05g16610, gene.Thate09g18560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1438 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036564, Pov_00036566 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G28505, Lb5G28736, Lb5G28743 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.669, AH08.114, BH05.724, BH08.59, CH02.3096, CH05.827 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0408740, gene-QOZ80_8AG0615250 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0002560.1, HORVU.MOREX.r3.7HG0705230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008510, gene-QYE76_033330 |
| Poaceae | Oryza coarctata | 3 | Oco09G000220, Oco10G000300, Oco16G000770 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g01460.1, LOC_Os08g02140.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G017500, gene-BS78_09G004900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402646, Pt_Chr0402653, Pt_Chr0501049 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr18G003110, Chr20G012650, Chr22G016990, Chr22G017010 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G031400, Tel1E01G034100, Tel7E01G548300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG001420, gene_TRIDC1AG001480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G013700.1, TraesCS1B02G017900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb260730_P002, Zm00001eb267460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51914 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22373, Zma_g27525 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1089, evm.TU.LG12.645 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1730, evm.TU.Scaffold_9_RagTag.1515 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12223, nbisL1-mrna-20688, nbisL1-mrna-20802 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12158, nbisL1-mrna-8549 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21503 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.956, evm.TU.utg000006l.1003 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009602, Maker00013572 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10538, nbisL1-mrna-13940 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15659, nbisL1-mrna-4572 |
| Salicaceae | Populus euphratica | 1 | populus_peu30857 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606967, gene-LOC132610572 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021201 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2212_chr01_- |
| Zosteraceae | Zostera marina | 2 | Zosma02g13100.v3.1, Zosma05g01750.v3.1 |