halophFGD

Basic Information

Locus ID: Lb5G28672

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the universal ribosomal protein uL13 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	200872878	200876497	+	Lb5G28672

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.75	35,870.06 Da	45.40	90.56	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00392	Ribosomal_L13	12	104	4.53914E-34	IPR005822
CDD	cd00392	Ribosomal_L13	12	104	4.53914E-34	IPR005822
Pfam	PF00572	Ribosomal protein L13	10	107	3.9E-13	IPR005822
Pfam	PF00572	Ribosomal protein L13	10	107	3.9E-13	IPR005822
SUPERFAMILY	SSF52161	Ribosomal protein L13	12	137	1.96E-32	IPR036899
SUPERFAMILY	SSF52161	Ribosomal protein L13	12	137	1.96E-32	IPR036899
Gene3D	G3DSA:3.90.1180.10	Ribosomal protein L13	7	138	7.6E-40	IPR036899
Gene3D	G3DSA:3.90.1180.10	Ribosomal protein L13	7	138	7.6E-40	IPR036899
TIGRFAM	TIGR01077	L13_A_E: ribosomal protein uL13	12	137	1.3E-32	IPR005755
TIGRFAM	TIGR01077	L13_A_E: ribosomal protein uL13	12	137	1.3E-32	IPR005755

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome) GO:0015934 (large ribosomal subunit)

KEGG Pathway

KO Term:

K02872 (large subunit ribosomal protein L13Ae)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G48760.1	Ribosomal protein L13 family protein.
RefSeq	XP_021851976.1	60S ribosomal protein L13a-4 [Spinacia oleracea]
Swiss-Prot	Q9FKC0	Large ribosomal subunit protein uL13w OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=1
TrEMBL	A0A0K9RU85	60S ribosomal protein L13a-4 OS=Spinacia oleracea OX=3562 GN=SOVF_028400 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2734
Plumbaginaceae	Limonium bicolor	90	Lb0G36861, Lb0G36915, Lb0G37393, Lb0G37441, Lb0G37645 ... Lb0G37943, Lb0G38106, Lb0G38123, Lb1G00247, Lb1G01449, Lb1G01710, Lb1G01806, Lb1G01860, Lb1G02159, Lb1G02317, Lb1G02384, Lb1G05943, Lb1G06245, Lb2G08303, Lb2G08431, Lb2G08930, Lb2G08938, Lb2G08972, Lb2G09582, Lb2G09600, Lb2G09662, Lb2G09670, Lb2G09672, Lb2G09898, Lb2G10709, Lb2G11736, Lb2G11738, Lb2G11978, Lb2G12177, Lb2G12223, Lb2G12325, Lb2G12798, Lb2G12820, Lb2G13243, Lb2G13279, Lb2G13810, Lb2G14137, Lb2G14314, Lb2G15092, Lb3G16104, Lb3G16150, Lb3G17709, Lb3G17719, Lb3G18507, Lb3G18527, Lb3G18899, Lb3G19608, Lb3G20088, Lb3G20791, Lb3G20948, Lb3G21267, Lb3G21394, Lb4G21555, Lb4G21796, Lb4G22022, Lb4G22264, Lb4G22658, Lb4G22755, Lb4G22758, Lb4G23752, Lb4G24009, Lb4G24443, Lb4G24452, Lb4G24647, Lb4G25049, Lb4G25361, Lb4G25656, Lb4G25797, Lb4G26332, Lb5G26690, Lb5G27630, Lb5G28672, Lb6G30159, Lb6G30724, Lb6G31187, Lb6G31394, Lb7G33042, Lb7G33045, Lb7G33400, Lb7G33966, Lb7G35179, Lb7G35191, Lb7G35522, Lb8G35809, Lb8G36652