Basic Information
Locus ID:
Lb5G28660
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 199943593 | 199944716 | - | Lb5G28660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 38,545.64 Da | 49.56 | 70.36 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 314 | 351 | 2.78878E-10 | - |
| CDD | cd16449 | RING-HC | 314 | 351 | 2.78878E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 312 | 355 | 1.0E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 312 | 355 | 1.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 358 | 1.91E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 358 | 1.91E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 362 | 1.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 362 | 1.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 314 | 351 | 2.5E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 314 | 351 | 2.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 352 | 10.718918 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 352 | 10.718918 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 264 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology