halophFGD

Basic Information

Locus ID: Lb5G28636

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	199185930	199191797	-	Lb5G28636

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.75	63,154.27 Da	52.81	89.39	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	245	539	1.14868E-53	-
CDD	cd00200	WD40	245	539	1.14868E-53	-
Pfam	PF00400	WD domain, G-beta repeat	462	497	0.12	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	502	539	4.0E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	243	280	4.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	243	280	4.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	502	539	4.0E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	462	497	0.12	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	289	325	0.0055	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	289	325	0.0055	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	239	539	4.58E-63	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	239	539	4.58E-63	IPR036322
Gene3D	G3DSA:2.130.10.10	-	236	540	1.6E-68	IPR015943
Gene3D	G3DSA:2.130.10.10	-	236	540	1.6E-68	IPR015943
SMART	SM00320	WD40_4	500	540	3.0E-10	IPR001680
SMART	SM00320	WD40_4	413	451	0.41	IPR001680
SMART	SM00320	WD40_4	371	411	1.0	IPR001680
SMART	SM00320	WD40_4	328	369	3.8	IPR001680
SMART	SM00320	WD40_4	241	280	6.6E-7	IPR001680
SMART	SM00668	ctlh	77	134	5.9E-4	IPR006595
SMART	SM00320	WD40_4	455	497	6.6	IPR001680
SMART	SM00668	ctlh	77	134	5.9E-4	IPR006595
SMART	SM00320	WD40_4	286	325	1.2E-6	IPR001680
SMART	SM00320	WD40_4	241	280	6.6E-7	IPR001680
SMART	SM00320	WD40_4	371	411	1.0	IPR001680
SMART	SM00320	WD40_4	413	451	0.41	IPR001680
SMART	SM00320	WD40_4	455	497	6.6	IPR001680
SMART	SM00320	WD40_4	286	325	1.2E-6	IPR001680
SMART	SM00320	WD40_4	328	369	3.8	IPR001680
SMART	SM00320	WD40_4	500	540	3.0E-10	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	248	281	8.913786	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	507	539	14.41838	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	293	334	14.084198	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	77	134	9.541204	IPR006595
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	293	329	10.601049	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	293	334	14.084198	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	77	134	9.541204	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	507	539	14.41838	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	44	76	8.547476	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	248	281	10.608706	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	293	329	10.601049	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	248	281	8.913786	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	248	281	10.608706	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	507	539	11.919224	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	507	539	11.919224	-
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	44	76	8.547476	IPR006594

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17985 (activating molecule in BECN1-regulated autophagy protein 1)

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04140 (Autophagy - animal) map04140 (Autophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G43920.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_021722150.1	WD repeat-containing protein 26-like [Chenopodium quinoa]
Swiss-Prot	Q9FND4	WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1
TrEMBL	A0A803LAD9	WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg16228, jg19040, jg19043, jg19045, jg19048, jg24101 ... jg37461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17794, gene_5317
Amaranthaceae	Atriplex hortensis	4	Ah027031, Ah029123, Ah037565, Ah037594
Amaranthaceae	Beta vulgaris	2	BVRB_6g132130, BVRB_7g166270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13522, Sbi_jg52363, Sbi_jg59153, Sbi_jg63483
Amaranthaceae	Salicornia europaea	2	Seu_jg23419, Seu_jg9489
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00023186, GOSA_00023187, GOSA_00023189, GOSA_00023377 ... GOSA_00023378, GOSA_00029520
Amaranthaceae	Suaeda glauca	4	Sgl33515, Sgl38864, Sgl72428, Sgl75977
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001394, gene:ENSEOMG00000003013 ... gene:ENSEOMG00000007855, gene:ENSEOMG00000026627, gene:ENSEOMG00000036103, gene:ENSEOMG00000040929, gene:ENSEOMG00000052547
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0021550, CQ.Regalona.r1.6BG0022730 ... CQ.Regalona.r1.7AG0011230, CQ.Regalona.r1.7BG0013400, CQ.Regalona.r1.9AG0000100, CQ.Regalona.r1.9BG0022010
Anacardiaceae	Pistacia vera	8	pistato.v30013160, pistato.v30015190, pistato.v30201810 ... pistato.v30201820, pistato.v30202660, pistato.v30202690, pistato.v30202700, pistato.v30212900
Apiaceae	Apium graveolens	4	Ag10G00843, Ag1G01685, Ag5G01877, Ag8G01943
Arecaceae	Cocos nucifera	6	COCNU_01G015670, COCNU_07G009010, scaffold002739G000010 ... scaffold009168G000010, scaffold009168G000020, scaffold013376G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695548, gene-LOC103696220, gene-LOC103707677 ... gene-LOC103722740
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.613.V1.1, AsparagusV1_06.39.V1.1 ... AsparagusV1_08.2950.V1.1, AsparagusV1_10.1880.V1.1, AsparagusV1_10.1881.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G28836, Ftri13G11884, Ftri3G21437
Brassicaceae	Arabidopsis thaliana	2	AT5G08560.1, AT5G43920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003179m.g.v1.0, Thhalv10013060m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g08740.v2.2, Sp2g26750.v2.2, Sp6g34330.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052620.2N, BniB04g001790.2N, BniB04g017400.2N ... BniB06g011980.2N, BniB08g003910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2175, Ceq03G1989, Ceq06G2280
Casuarinaceae	Casuarina glauca	3	Cgl02G2252, Cgl03G2137, Cgl06G2390
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g11340
Dunaliellaceae	Dunaliella salina	1	Dusal.1069s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10267, nbisL1-mrna-2193, nbisL1-mrna-6802
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1576, evm.TU.LG03.2506
Plantaginaceae	Plantago ovata	2	Pov_00001348, Pov_00024562
Plumbaginaceae	Limonium bicolor	3	Lb3G20752, Lb5G28636, Lb6G30403
Poaceae	Echinochloa crus-galli	6	AH01.1833, AH08.230, BH01.2128, BH08.214, CH01.2246 ... CH08.251
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127160, gene-QOZ80_2BG0182650 ... gene-QOZ80_8AG0616230, gene-QOZ80_8BG0643740
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0040900.1, HORVU.MOREX.r3.5HG0440360.2 ... HORVU.MOREX.r3.7HG0702990.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001411, gene-QYE76_011398, gene-QYE76_033585 ... gene-QYE76_033586
Poaceae	Oryza coarctata	4	Oco03G008170, Oco04G008570, Oco19G005600, Oco20G005520
Poaceae	Oryza sativa	2	LOC_Os02g19210.1, LOC_Os10g32770.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G211600, gene-BS78_07G032000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0402545, Pt_Chr0502527, Pt_Chr0704050, Pt_Chr0705494
Poaceae	Sporobolus alterniflorus	8	Chr06G013250, Chr09G010480, Chr0G025840, Chr0G029730 ... Chr16G001050, Chr17G001030, Chr20G013170, Chr29G012160
Poaceae	Thinopyrum elongatum	3	Tel1E01G275500, Tel5E01G152900, Tel7E01G535200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG022320, gene_TRIDC1BG027020 ... gene_TRIDC5AG011420, gene_TRIDC5BG013370, gene_TRIDC7AG043360, gene_TRIDC7BG034630
Poaceae	Triticum aestivum	9	TraesCS1A02G146900.1, TraesCS1B02G164700.1 ... TraesCS1D02G145000.1, TraesCS5A02G074900.1, TraesCS5B02G081300.1, TraesCS5D02G088400.1, TraesCS7A02G311000.1, TraesCS7B02G210600.1, TraesCS7D02G307300.1
Poaceae	Zea mays	3	Zm00001eb046310_P001, Zm00001eb173190_P001 ... Zm00001eb261740_P004
Poaceae	Zoysia japonica	3	nbis-gene-19262, nbis-gene-39178, nbis-gene-41486
Poaceae	Zoysia macrostachya	3	Zma_g16159, Zma_g22416, Zma_g23559
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.510, evm.TU.LG03.2384, evm.TU.LG03.2385 ... evm.TU.LG04.256, evm.TU.LG17.1428, evm.TU.LG17.1430
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07110, gene.Posoc08g08590
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.6, evm.TU.Scaffold_17_RagTag.1002 ... evm.TU.Scaffold_17_RagTag.1003, evm.TU.Scaffold_5_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-11632, nbisL1-mrna-23725, nbisL1-mrna-23726 ... nbisL1-mrna-26291
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11078, nbisL1-mrna-12120, nbisL1-mrna-6119
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10237, nbisL1-mrna-17363, nbisL1-mrna-21879 ... nbisL1-mrna-21880
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.7, evm.TU.utg000006l.421 ... evm.TU.utg000013l.560
Rhizophoraceae	Kandelia obovata	3	Maker00004520, Maker00004641, Maker00014113
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10956, nbisL1-mrna-11715, nbisL1-mrna-9875
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19862, nbisL1-mrna-23068, nbisL1-mrna-23069 ... nbisL1-mrna-2916
Salicaceae	Populus euphratica	6	populus_peu05939, populus_peu15013, populus_peu19808 ... populus_peu26662, populus_peu26667, populus_peu32670
Solanaceae	Lycium barbarum	4	gene-LOC132610349, gene-LOC132618795, gene-LOC132636700 ... gene-LOC132640864
Solanaceae	Solanum chilense	4	SOLCI001770700, SOLCI002039300, SOLCI003769700 ... SOLCI006669800
Solanaceae	Solanum pennellii	4	gene-LOC107005623, gene-LOC107020475, gene-LOC107025686 ... gene-LOC107029499
Tamaricaceae	Reaumuria soongarica	3	STRG.2139_chr01_+, STRG.8197_chr05_-, gene_1632
Tamaricaceae	Tamarix chinensis	3	TC01G0524, TC01G2384, TC03G1387
Zosteraceae	Zostera marina	1	Zosma06g11670.v3.1