Basic Information
Locus ID:
Lb5G28622
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 198119791 | 198121667 | + | Lb5G28622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 32,504.99 Da | 29.83 | 79.83 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 2 | 214 | 1.0E-39 | IPR001223 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 2 | 214 | 1.0E-39 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 2 | 219 | 8.43E-27 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 119 | 185 | 1.16E-8 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 2 | 219 | 8.43E-27 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 119 | 185 | 1.16E-8 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 2 | 215 | 8.3E-53 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 118 | 185 | 8.3E-53 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 2 | 215 | 8.3E-53 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 118 | 185 | 8.3E-53 | IPR029070 |
| SMART | SM00636 | 2g34 | 2 | 214 | 6.3E-6 | IPR011583 |
| SMART | SM00636 | 2g34 | 2 | 214 | 6.3E-6 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 230 | 30.066015 | IPR001223 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 230 | 30.066015 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19770.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_023924469.1 | cysteine-rich receptor-like protein kinase 4 [Quercus suber] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5AZK0 | GH18 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology