Basic Information
Locus ID:
Lb5G28350
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 186333215 | 186337512 | - | Lb5G28350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.22 | 38,959.34 Da | 45.80 | 92.34 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05574 | STKc_phototropin_like | 1 | 269 | 5.04725E-165 | - |
| CDD | cd05574 | STKc_phototropin_like | 1 | 269 | 5.04725E-165 | - |
| Pfam | PF00069 | Protein kinase domain | 1 | 253 | 2.2E-58 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1 | 253 | 2.2E-58 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 267 | 2.97E-70 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 267 | 2.97E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 56 | 1.7E-87 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 56 | 1.7E-87 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 57 | 266 | 1.7E-87 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 57 | 266 | 1.7E-87 | - |
| SMART | SM00220 | serkin_6 | 1 | 253 | 1.7E-66 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1 | 253 | 1.7E-66 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 253 | 41.007694 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 253 | 41.007694 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 94 | 106 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 94 | 106 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45780.1 | phototropin 1. Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. | 0 |
| RefSeq | XP_043708972.1 | phototropin-1 isoform X3 [Telopea speciosissima] | 0 |
| O48963 | Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A126X3C1 | Putative LOV domain-containing protein OS=Limonium spectabile OX=63099 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005462 |
| Anacardiaceae | Pistacia vera | 18 | pistato.v30103110, pistato.v30104160, pistato.v30104180 ... |
| Apiaceae | Apium graveolens | 1 | Ag5G00025 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2260.V1.1 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28350 |
| Poaceae | Echinochloa crus-galli | 1 | AH04.12 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41285 |