Basic Information
Locus ID:
Lb5G28293
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 185046717 | 185049687 | - | Lb5G28293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 13,616.74 Da | 34.16 | 85.93 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 5.1504E-71 | - |
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 5.1504E-71 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 5.6E-51 | IPR004241 |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 5.6E-51 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 117 | 1.45E-43 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 117 | 1.45E-43 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 118 | 3.4E-58 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 118 | 3.4E-58 | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05630.1 | Ubiquitin-like superfamily protein. in the Arabidopsis autophagy pathway | 0 |
| RefSeq | XP_022776650.1 | autophagy-related protein 8B [Durio zibethinus] | 0 |
| M1C146 | Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1 | 0 | |
| TrEMBL | B7FH53 | Autophagy-related protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0322571 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology