Basic Information
Locus ID:
Lb5G28245
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PHD finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 183853259 | 183858800 | - | Lb5G28245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 81,597.59 Da | 45.32 | 83.57 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 628 | 673 | 1.43927E-22 | - |
| CDD | cd15556 | PHD_MMD1_like | 628 | 673 | 1.43927E-22 | - |
| Pfam | PF00628 | PHD-finger | 629 | 674 | 8.9E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 629 | 674 | 8.9E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 618 | 674 | 3.99E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 618 | 674 | 3.99E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 614 | 678 | 2.4E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 614 | 678 | 2.4E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 628 | 674 | 3.4E-7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 628 | 674 | 3.4E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 629 | 673 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 629 | 673 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33420.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010674289.2 | PHD finger protein At1g33420 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C810 | PHD finger protein At1g33420 OS=Arabidopsis thaliana OX=3702 GN=At1g33420 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AHV2 | PHD domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology