HalophFGD

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Basic Information
Locus ID: Lb5G28183
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Maps and Mapping Data
Chromosome Start End Strand ID
chr05 181970223 181975535 - Lb5G28183
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.08 53,568.17 Da 39.12 86.35 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00515 Tetratricopeptide repeat 320 352 3.2E-10 IPR001440
Pfam PF00515 Tetratricopeptide repeat 390 418 3.0E-8 IPR001440
Pfam PF13414 TPR repeat 428 469 3.1E-8 -
Pfam PF13414 TPR repeat 227 265 3.0E-11 -
Pfam PF13431 Tetratricopeptide repeat 273 305 2.1E-5 -
Pfam PF13414 TPR repeat 227 265 3.0E-11 -
Pfam PF00515 Tetratricopeptide repeat 149 180 9.2E-9 IPR001440
Pfam PF00515 Tetratricopeptide repeat 320 352 3.2E-10 IPR001440
Pfam PF00515 Tetratricopeptide repeat 390 418 3.0E-8 IPR001440
Pfam PF13414 TPR repeat 428 469 3.1E-8 -
Pfam PF13431 Tetratricopeptide repeat 273 305 2.1E-5 -
Pfam PF00515 Tetratricopeptide repeat 149 180 9.2E-9 IPR001440
SUPERFAMILY SSF48452 TPR-like 257 479 3.32E-48 IPR011990
SUPERFAMILY SSF48452 TPR-like 48 308 1.08E-49 IPR011990
SUPERFAMILY SSF48452 TPR-like 48 308 1.08E-49 IPR011990
SUPERFAMILY SSF48452 TPR-like 257 479 3.32E-48 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 188 221 7.2E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 256 290 1.3E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 459 480 2.5E-5 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 256 290 1.3E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 222 255 9.1E-9 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 388 425 1.7E-6 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 152 187 1.7E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 426 458 1.7E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 43 151 1.4E-18 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 459 480 2.5E-5 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 324 384 7.8E-16 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 291 323 1.0E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 188 221 7.2E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 222 255 9.1E-9 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 426 458 1.7E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 388 425 1.7E-6 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 152 187 1.7E-10 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 43 151 1.4E-18 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 291 323 1.0E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 324 384 7.8E-16 IPR011990
SMART SM00028 tpr_5 353 386 7.0 IPR019734
SMART SM00028 tpr_5 183 216 0.0036 IPR019734
SMART SM00028 tpr_5 387 420 3.2E-5 IPR019734
SMART SM00028 tpr_5 217 250 8.2E-5 IPR019734
SMART SM00028 tpr_5 285 318 9.9E-4 IPR019734
SMART SM00028 tpr_5 81 114 1.1 IPR019734
SMART SM00028 tpr_5 115 148 1.3E-5 IPR019734
SMART SM00028 tpr_5 81 114 1.1 IPR019734
SMART SM00028 tpr_5 421 454 3.0E-4 IPR019734
SMART SM00028 tpr_5 319 352 4.0E-8 IPR019734
SMART SM00028 tpr_5 251 284 1.3E-8 IPR019734
SMART SM00028 tpr_5 387 420 3.2E-5 IPR019734
SMART SM00028 tpr_5 183 216 0.0036 IPR019734
SMART SM00028 tpr_5 217 250 8.2E-5 IPR019734
SMART SM00028 tpr_5 285 318 9.9E-4 IPR019734
SMART SM00028 tpr_5 421 454 3.0E-4 IPR019734
SMART SM00028 tpr_5 353 386 7.0 IPR019734
SMART SM00028 tpr_5 319 352 4.0E-8 IPR019734
SMART SM00028 tpr_5 115 148 1.3E-5 IPR019734
SMART SM00028 tpr_5 149 182 9.0E-7 IPR019734
SMART SM00028 tpr_5 149 182 9.0E-7 IPR019734
SMART SM00028 tpr_5 251 284 1.3E-8 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 149 182 10.1779 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 421 454 9.3814 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 387 418 8.957401 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 455 480 8.991087 -
ProSiteProfiles PS50005 TPR repeat profile. 81 114 8.8504 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 183 216 9.1749 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 149 180 8.721603 -
ProSiteProfiles PS50005 TPR repeat profile. 319 352 12.2724 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 387 420 10.5024 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 217 250 12.0069 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 217 249 9.597424 -
ProSiteProfiles PS50005 TPR repeat profile. 217 250 12.0069 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 319 352 12.2724 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 251 284 11.741401 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 81 114 8.8504 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 115 148 8.7619 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 183 216 9.1749 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 149 180 8.721603 -
ProSiteProfiles PS50005 TPR repeat profile. 115 148 8.7619 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 251 283 9.664794 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 387 418 8.957401 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 251 283 9.664794 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 319 352 10.035333 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 319 352 10.035333 -
ProSiteProfiles PS50293 TPR repeat region circular profile. 217 249 9.597424 -
ProSiteProfiles PS50005 TPR repeat profile. 149 182 10.1779 IPR019734
ProSiteProfiles PS50293 TPR repeat region circular profile. 455 480 8.991087 -
ProSiteProfiles PS50005 TPR repeat profile. 421 454 9.3814 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 387 420 10.5024 IPR019734
ProSiteProfiles PS50005 TPR repeat profile. 251 284 11.741401 IPR019734
MobiDBLite mobidb-lite consensus disorder prediction 1 26 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 26 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K09667 (protein O-GlcNAc transferase [EC:2.4.1.255])
Pathway:
ko00514 (Other types of O-glycan biosynthesis) map00514 (Other types of O-glycan biosynthesis)
Reaction:
R09304 (UDP-N-acetyl-D-glucosamine + [Protein]-L-serine <=> UDP + G12573) R09676 (UDP-N-acetyl-alpha-D-glucosamine + [Protein]-L-serine <=> UDP + [Protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein. Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene. 0
RefSeq XP_010674215.1 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q9M8Y0 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1 0
TrEMBL A0A438EJ12 Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Vitis vinifera OX=29760 GN=SEC_3 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium album 1 gene:ENSEOMG00000044119
Plumbaginaceae Limonium bicolor 1 Lb5G28183
Poaceae Triticum dicoccoides 2 gene_TRIDC2BG002960, gene_TRIDC3BG074590
Poaceae Triticum aestivum 1 TraesCS2B02G245700.1
Poaceae Zoysia japonica 2 nbis-gene-19012, nbis-gene-28383
Posidoniaceae Posidonia oceanica 5 gene.Posoc02g22890, gene.Posoc02g28750, gene.Posoc05g03890 ...
gene.Posoc09g11510, gene.Posoc10g03250
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