Basic Information
Locus ID:
Lb5G28127
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 179594435 | 179597562 | - | Lb5G28127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 81,235.19 Da | 38.76 | 95.58 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 36 | 331 | 1.56077E-153 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 36 | 331 | 1.56077E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 354 | 641 | 3.4E-24 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 43 | 327 | 6.4E-8 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 43 | 327 | 6.4E-8 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 354 | 641 | 3.4E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 349 | 645 | 1.54E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 330 | 2.88E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 349 | 645 | 1.54E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 330 | 2.88E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 349 | 646 | 1.9E-44 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 34 | 332 | 4.4E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 34 | 332 | 4.4E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 349 | 646 | 1.9E-44 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 36 | 332 | 27.143124 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 36 | 332 | 27.143124 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 349 | 646 | 26.599075 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 349 | 646 | 26.599075 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 723 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58050.1 | SHV3-like 4. | 0 |
| RefSeq | XP_048490806.1 | glycerophosphodiester phosphodiesterase GDPDL7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FGT9 | Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 GN=GDPDL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N884 | glycerophosphodiester phosphodiesterase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology