Basic Information
Locus ID:
Lb5G28122
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin-like domain-containing CTD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 179381836 | 179385870 | - | Lb5G28122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 41,317.12 Da | 51.69 | 93.48 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01813 | Ubl_UBLCP1 | 16 | 90 | 2.3967E-31 | - |
| CDD | cd01813 | Ubl_UBLCP1 | 16 | 90 | 2.3967E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 18 | 59 | 3.8E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 18 | 59 | 3.8E-8 | IPR000626 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 149 | 337 | 1.3E-22 | IPR004274 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 149 | 337 | 1.3E-22 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 136 | 340 | 1.82E-24 | IPR036412 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 96 | 1.13E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 96 | 1.13E-15 | IPR029071 |
| SUPERFAMILY | SSF56784 | HAD-like | 136 | 340 | 1.82E-24 | IPR036412 |
| Gene3D | G3DSA:3.10.20.90 | - | 9 | 94 | 4.7E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 9 | 94 | 4.7E-20 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 100 | 353 | 4.4E-57 | IPR023214 |
| Gene3D | G3DSA:3.40.50.1000 | - | 100 | 353 | 4.4E-57 | IPR023214 |
| SMART | SM00577 | forpap2 | 147 | 315 | 6.0E-8 | IPR004274 |
| SMART | SM00213 | ubq_7 | 16 | 90 | 7.0E-8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 16 | 90 | 7.0E-8 | IPR000626 |
| SMART | SM00577 | forpap2 | 147 | 315 | 6.0E-8 | IPR004274 |
| TIGRFAM | TIGR02245 | HAD_IIID1: HAD hydrolase, family IIID | 201 | 348 | 9.5E-80 | IPR011943 |
| TIGRFAM | TIGR02245 | HAD_IIID1: HAD hydrolase, family IIID | 201 | 348 | 9.5E-80 | IPR011943 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 331 | 18.700516 | IPR004274 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 88 | 8.959786 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 88 | 8.959786 | IPR000626 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 331 | 18.700516 | IPR004274 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G06599.1 | ubiquitin family protein. | 0 |
| RefSeq | XP_010102451.1 | ubiquitin-like domain-containing CTD phosphatase [Morus notabilis] | 0 |
| Q8W3M6 | Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g06599 PE=2 SV=1 | 0 | |
| TrEMBL | W9S7C7 | protein-serine/threonine phosphatase OS=Morus notabilis OX=981085 GN=L484_006962 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28381 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24855 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025119 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g145730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12933, Sbi_jg52930 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8928 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00028807, GOSA_00028810 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32578, Sgl37857 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001641, gene:ENSEOMG00000003888 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0011940, CQ.Regalona.r1.6BG0012310 |
| Apiaceae | Apium graveolens | 1 | Ag6G01875 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2746.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G16314 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G06599.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025663m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16990.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g072770.2N, BniB05g019160.2N, BniB08g061120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0421 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0459 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0282s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g01370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.770 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039951 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28122 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4047, BH02.4057, CH02.4086 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041640, gene-QOZ80_1BG0091650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0298380.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056883 |
| Poaceae | Oryza coarctata | 2 | Oco01G026270, Oco02G027250 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g65450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G353600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600002, Pt_Chr0600016 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G003330, Chr03G021240, Chr05G029910, Chr08G020990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G614400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055160, gene_TRIDC3BG061750 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G386000.1, TraesCS3B02G418100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb366430_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11222 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9109 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG23.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02030 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1441, evm.TU.Scaffold_2_RagTag.1443 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3698 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-82 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18877 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.436 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005091 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2869, nbisL1-mrna-2870 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19187 |
| Salicaceae | Populus euphratica | 3 | populus_peu08294, populus_peu33320, populus_peu38029 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598669 |
| Solanaceae | Solanum chilense | 1 | SOLCI002905800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16712 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0032 |
| Zosteraceae | Zostera marina | 1 | Zosma03g37060.v3.1 |